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Biological Physics II - Organization and Dynamics

ORAL · VIR-M01 · ID: 3113166

Presentations

  • ProtSCAPE: Mapping the landscape of protein conformations in molecular dynamics

    ORAL

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    Publication: Siddharth Viswanath*, Dhananjay Bhaskar*, David R Johnson, Joao Felipe Rocha, Egbert Castro, Jackson D Grady, Alex T Grigas, Michael Perlmutter, Corey O'Hern, Smita Krishnaswamy. ProtSCAPE: Mapping the landscape of protein conformation in molecular dynamics. Molecular Machine Learning Conference (2024)

    Presenters

    • Dhananjay Bhaskar

      Yale University

    Authors

    • Dhananjay Bhaskar

      Yale University

    • Siddharth Viswanath

      Yale University

    • David R Johnson

      Boise State University

    • Joao F Rocha

      Yale University

    • Egbert Castro

      Yale University

    • Jackson D Grady

      Yale University

    • Alex T Grigas

      Yale University

    • Michael A Perlmutter

      Boise State University

    • Corey S O'Hern

      Yale University

    • Smita Krishnaswamy

      Yale University

    View abstract →

  • Mesoscale properties of protein clusters determine the size and nature of liquid-liquid phase separation (LLPS)

    ORAL

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    Publication: 1. Mesoscale properties of protein clusters determine the size and nature of liquid-liquid phase separation (LLPS) - submitted<br>2. Core-shell model of the clusters of CPEB4 isoforms preceding liquid-liquid phase separation - Biophys. J. , 2023

    Presenters

    • Gonen Golani

      University of Haifa

    Authors

    • Samuel A Safran

      Weizmann Institute of Science

    • Gonen Golani

      University of Haifa

    • Anthony A Hyman

      Max Planck Institute of Cell Biology and Genetics

    • Daniella Goldfarb

      Weizmann Institute of Science

    • Manas Seal

      Weizmann Institute of Science

    • Mrityunjoy Kar

      Institute of Biofunctional Polymer Materials, Leibniz Institute of Polymer Research

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  • A mechanical model for the coordination of septum formation and cell splitting in Staphylococcus aureus

    ORAL

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    Publication: Local decrease in cell wall stress as a possible trigger for cell splitting in Staphylococcus aureus - publication in preparation<br>Sheila Hoshyaripour, Marco Mauri, David Owen, Abimbola F. Adedeji Olulana, Jamie K. Hobbs, Simon J. Foster and Rosalind J. Allen

    Presenters

    • Rosalind J Allen

      University of Jena

    Authors

    • Rosalind J Allen

      University of Jena

    • Sheila Hoshyaripour

      University Jena

    • Marco Mauri

      University Jena

    • David Owen

      University of Sheffield

    • Abimbola Feyisara Olulana

      University of Sheffield

    • Jamie K. Hobbs

      University of Sheffield

    • Simon J Foster

      University of Sheffield

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  • Mathematical modeling of the frozen zone dynamics in hydrogel and biological tissue

    ORAL

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    Publication: O. V. Ivakhnenko, O. F. Todrin, V. Yu. Globa, M. O. Chyzh, G. O. Kovalov, S. N. Shevchenko, bioRxiv:2024.10.19.619201 (2024)

    Presenters

    • Oleh Ivakhnenko

      B. Verkin ILTPE of NASU, B. Verkin ILTPE, Ukraine, and RIKEN, Japan

    Authors

    • Oleh Ivakhnenko

      B. Verkin ILTPE of NASU, B. Verkin ILTPE, Ukraine, and RIKEN, Japan

    • Artem Ryzhov

      B. Verkin ILTPE of NASU, B. Verkin ILTPE

    • Sergey N Shevchenko

      B. Verkin ILTPE of NASU, B. Verkin ILTPE, Kharkov University

    View abstract →

  • A Novel Method for UV Thin-Film Backside Development for Ordered DNA Fragmentation

    ORAL

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    Publication: [1] Righini, M., Costa, J., & Zhou, W. (2021). DNA bridges: A novel platform for single-molecule sequencing and other DNA-protein interaction applications. PloS one, 16(11), e0260428. https://doi.org/10.1371/journal.pone.0260428<br>[2] Li, N., Jin, K., Bai, Y., Fu, H., Liu, L., & Liu, B. (2020). Tn5 Transposase Applied in Genomics Research. International journal of molecular sciences, 21(21), 8329. https://doi.org/10.3390/ijms21218329

    Presenters

    • Kevin Zhang

      North Hunterdon High School

    Authors

    • Kevin Zhang

      North Hunterdon High School

    • Stella Song

      Phillips Exeter Academy

    • Elena Mingorance

      South Side High School

    • Kevin Lee

      The Albany Academies

    • Aditi Kiran

      BASIS Independent Fremont

    • Alice Hu

      King High School

    • Danielle Liu

      University of Pennsylvania

    • Patrick Lewis

      State Univ of NY - Stony Brook

    • Navya Gautam

      Duke University

    • Jonathan C Sokolov

      State Univ of NY - Stony Brook

    • Miriam Rafailovich

      Stony Brook University, The State University of New York, Stony Brook University, State Univ of NY - Stony Brook

    View abstract →

  • Femtosecond Three-Dimensional Imaging of Single-Protein with Hard X-ray Laser

    ORAL

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    Publication: 1. P.L. Xavier et al. Femtosecond Three-Dimensional Imaging of Single-Protein with Hard X-ray Laser. (to be submitted) (in preparation)

    Presenters

    • Paul Lourdu Xavier

      Center for Free-Electron Laser Science, DESY/Max-Planck Institute for the Structure and Dynamics of Matter/European XFEL

    Authors

    • Paul Lourdu Xavier

      Center for Free-Electron Laser Science, DESY/Max-Planck Institute for the Structure and Dynamics of Matter/European XFEL

    • Andrew J Morgan

      University of Melbourne

    • Johan Bielecki

      European XFEL

    • Richard Bean

      European XFEL

    • Chufeng Li

      Center for Free-Electron Laser Science, DESY

    • Wenhui Zhang

      Center for Free-Electron Laser Science, DESY

    • Jungcheng E

      European XFEL

    • Mansi Butola

      Center for Free-Electron Laser Science, DESY

    • Amit K Samanta

      Center for Free-Electron Laser Science, DESY

    • Jochen Kuepper

      Center for Free-Electron Laser Science, DESY

    • Maia Azubel

      Stanford University

    • David A Bushnell

      Stanford University

    • Sébastien Boutet

      SLAC National Accelerator Laboratory

    • Roger D Kornberg

      Stanford University

    • David Baker

      Institute for Protein Design, University of Washington, University of Washington

    • Neil King

      Institute for Protein Design, University of Washington

    • Sergey Ovchinnikov

      Massachusetts Institute of Technology

    • Erin C Yang

      Institute for Protein Design, University of Washington

    • Shunzhi Wang

      Institute for Protein Design, University of Washington

    • Richard Kirian

      Arizona State University

    • Filipe Maia

      Uppsala University

    • Duane Loh

      National University of Singapore, Department of Physics, Department of Biological Sciences, and NUS Centre for Bioimaging Sciences, National University of Singapore

    • Saša Bajt

      Center for Free-Electron Laser Science, DESY

    • Henry N Chapman

      Center for Free-Electron Laser Science, DESY

    View abstract →