APS Logo

Physical Virology II

FOCUS · MAR-T73 · ID: 3113114

Presentations

  • Computational modeling of virus assembly in the presence of biomolecular condensates and antiviral agents

    ORAL · Invited

    –

    Publication: 1. Hagan, MF; Mohajerani, F, "Self-Assembly Coupled to Liquid-Liquid Phase Separation", PLOS Comp. Biol., 9, e1010652 (2023) https://doi.org/10.1371/journal.pcbi.1010652<br>2. Mohajerani F, Tyukodi B, Schlicksup CJ, Hadden-Perilla JA, Zlotnick A, Hagan MF, "Multiscale Modeling of Hepatitis B Virus Capsid Assembly and its Dimorphism", ACS Nano, 16, 13845–13859 (2022) https://doi.org/10.1021/acsnano.2c02119<br>3. Pradhan, S, Frechette, LB, Perez Segura, C, Zlotnick, A, Hadden-Perilla JA, Hagan MF, in preparation<br>4. Sundararajan, N, Caballero, F, Frechett, LB, Baskaran, A, Hagan, MF, in preparation <br>

    Presenters

    • Michael F Hagan

      Brandeis University

    Authors

    • Michael F Hagan

      Brandeis University

    View abstract →

  • Mechanisms of virus budding through membranes

    ORAL

    –

    Presenters

    • Shuyang Zhang

      University of California, Riverside

    Authors

    • Shuyang Zhang

      University of California, Riverside

    • Siyu Li

      California State Polytechnic University

    • Ajay Gopinathan

      University of California, Merced, Dept. of Physics, UC Merced, Department of Physics, University of California, Merced

    • Paul van der Schoot

      Eindhoven University of Technology

    • Roya Zandi

      University of California, Riverside

    View abstract →

  • Structure and infection dynamics of Bxb1, a phage infecting Mycobacterium smegmatis

    ORAL

    –

    Publication: K. Freeman, S. Mondal, L. Macale, J. Podgorski, S. White, B. Silva, V. Ortiz, A. Huet, J. Narsico, M-C. Ho, D. Jacobs-Sera, T. Lowary, J. Conway, D. Park, G. Hatfull. Structure and Infection Dynamics of Mycobacteriophage Bxb1. Under review.

    Presenters

    • Krista G Freeman

      University of Pittsburgh

    Authors

    • Krista G Freeman

      University of Pittsburgh

    • Sudipta Mondal

      Department of Integrative Structural and Computational Biology, Scripps Research

    • Lourriel S Macale

      Institute of Biological Chemistry, Academia Sinica

    • Jennifer Podgorski

      Department of Molecular and Cell Biology, University of Connecticut

    • Simon J White

      Department of Molecular and Cell Biology, University of Connecticut

    • Benjamin H Silva

      Department of Integrative Structural and Computational Biology, Scripps Research

    • Valery Ortiz

      Department of Integrative Structural and Computational Biology, Scripps Research

    • Alexis Huet

      Department of Structural Biology, University of Pittsburgh School of Medicine

    • Ronelito J Perez

      Institute of Biological Chemistry, Academia Sinica

    • Joemark T Narsico

      Institute of Biological Chemistry, Academia Sinica

    • Meng-Chiao Ho

      Institute of Biological Chemistry, Academia Sinica

    • Deborah Jacobs-Sera

      Department of Biological Sciences, University of Pittsburgh

    • Todd L Lowary

      Institute of Biological Chemistry, Academia Sinica

    • James F Conway

      Department of Structural Biology, University of Pittsburgh School of Medicine

    • Donghyun Park

      Department of Integrative Structural and Computational Biology, Scripps Research

    • Graham F Hatfull

      Department of Biological Sciences, University of Pittsburgh

    View abstract →

  • Ionic impact on viral capsid dimorphism

    ORAL

    –

    Presenters

    • Kevin Yang

      University of California, Riverside

    Authors

    • Kevin Yang

      University of California, Riverside

    • Alireza Ramezani

      University of California, Riverside

    • Juana Martin Gonzalez

      University of California, Riverside

    • Paul van der Schoot

      Eindhoven University of Technology

    • Roya Zandi

      University of California, Riverside

    View abstract →

  • Modeling of inhaled viral transmission dynamics

    ORAL

    –

    Publication: 1. Basu, S., Malakar, A., & Akash, M. M. H. (2024). A mechanistic model for smallpox transmission via inhaled aerosols inside respiratory pathways. arXiv preprint arXiv:2403.04064.<br>2. Basu, S. (2021). Computational characterization of inhaled droplet transport to the nasopharynx. Scientific Reports, 11(1), 6652.

    Presenters

    • Saikat Basu

      South Dakota State University

    Authors

    • Saikat Basu

      South Dakota State University

    View abstract →

  • Relaxational dynamics of the T-number conversion of virus capsids

    ORAL

    –

    Presenters

    • Alexander B Clark

      University of California, Riverside

    Authors

    • Alexander B Clark

      University of California, Riverside

    • Mohammadamin Safdari

      University of California, Riverside

    • Roya Zandi

      University of California, Riverside

    • Paul van der Schoot

      Eindhoven University of Technology

    View abstract →

  • Error Thresholds in Presence of Epistatic Interactions in RNA Viruses:Insights from Replica Symmetry Breaking into the Evolution of Viral Populations in Rugged Fitness Landscapes.

    ORAL

    –

    Publication: - Arxiv link: arxiv.org/abs/2409.11944<br>- Submitted on 13 Aug 24 To Physical Review E. Accepted on 15 October.

    Presenters

    • David A Herrera Marti

      Université Grenoble Alpes and CEA List, Université Grenoble Alpes, CEA List

    Authors

    • David A Herrera Marti

      Université Grenoble Alpes and CEA List, Université Grenoble Alpes, CEA List

    View abstract →