Genome Organization and Subnuclear Phenomena I: Physical Models and Principles

Presentations

• Three pieces in genome organization

  ORAL · Invited

  March 19, 2025, 6:00 PM – March 19, 2025, 6:36 PM

  Presenters

  • Michele Pierro

    Northeastern University

  Authors

  • Michele Pierro

    Northeastern University

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• Abstract Withdrawn

  ORAL Withdrawn

  March 19, 2025, 6:36 PM – March 19, 2025, 6:48 PM

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• Overlap reduction, entanglement dilution, and anomalous dynamics of active polymer melts regulated by active loop extrusion

  ORAL

  March 19, 2025, 6:48 PM – March 19, 2025, 7:00 PM

  Presenters

  • Brian Chan

    Duke University

  Authors

  • Brian Chan

    Duke University

  • Michael Rubinstein

    Duke University

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• Investigation of the Histone Code using de novo Epigenetic Knockouts

  ORAL

  March 19, 2025, 7:00 PM – March 19, 2025, 7:12 PM

  Presenters

  • Soren Christopher Kyhl

    University of Chicago

  Authors

  • Soren Christopher Kyhl

    University of Chicago

  • Juan J De Pablo

    University of Chicago

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• Abstract Withdrawn

  ORAL Withdrawn

  March 19, 2025, 7:12 PM – March 19, 2025, 7:24 PM

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• Characterization of solid-like motion in an active polymer model for chromatin

  ORAL

  March 19, 2025, 7:24 PM – March 19, 2025, 7:36 PM

  Presenters

  • Sucheol Shin

    University of Texas at Austin

  Authors

  • Sucheol Shin

    University of Texas at Austin

  • Guang Shi

    University of Texas at Austin, The University of Texas at Austin

  • Dave Thirumalai

    University of Texas at Austin, UT Austin

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• Abstract Withdrawn

  ORAL Withdrawn

  March 19, 2025, 7:36 PM – March 19, 2025, 7:48 PM

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• Compaction-mediated segregation of partly replicated bacterial chromosome

  ORAL

  March 19, 2025, 7:48 PM – March 19, 2025, 8:00 PM

  Presenters

  • Sumitabha Brahmachari

    Rice University

  Authors

  • Sumitabha Brahmachari

    Rice University

  • Shaun G Newman

    Weizmann Institute of Science, Rice University, Wiezmann Institute of Scince, Columbia University, University of Texas at Austin, Los Alamos National Laboratory

  • Vinicius Contessoto

    Rice University

  • Matheus F Mello

    Rice University

  • Jose N Onuchic

    Rice University

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• Double helical chromosomes: a "loops on a ring" polymeric model

  ORAL

  March 19, 2025, 8:00 PM – March 19, 2025, 8:12 PM

  Presenters

  • Luyang Li

    University of Minnesota

  Authors

  • Luyang Li

    University of Minnesota

  • Sabin Adhikari

    University of Minnesota

  • Kevin D Dorfman

    University of Minnesota

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• Chromosome-dependent transcription and cell width confinement drive nucleoid segregation and couple it to cell growth in the rod-shaped Escherichia coli.

  ORAL

  March 19, 2025, 8:12 PM – March 19, 2025, 8:24 PM

  Presenters

  • Alexandros Papagiannakis

    Department of Biology, Stanford University, Stanford, CA 94305, USA

  Authors

  • Alexandros Papagiannakis

    Department of Biology, Stanford University, Stanford, CA 94305, USA

  • Qiwei Yu

    Princeton University, Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton NJ 08544, USA

  • Sander K Govers

    Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA

  • Wei-Hsiang Lin

    Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA

  • Ned S Wingreen

    Princeton University, Department of Molecular Biology, Princeton University, Princeton NJ 08544, USA

  • Christine Jacobs-Wagner

    Department of Microbiology and Immunology, School of Medicine, Stanford, CA 94305, USA

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• Chromatin Compartmentalization can Emerge from Crosslinks, Motors, and Nuclear Deformability

  ORAL

  March 19, 2025, 8:24 PM – March 19, 2025, 8:36 PM

  Presenters

  • Ligesh Theeyancheri

    Syracuse University

  Authors

  • Ligesh Theeyancheri

    Syracuse University

  • Edward J Banigan

    Massachusetts Institute of Technology

  • Jennifer M Schwarz

    Syracuse University, Department of Physics, Syracuse University

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• Protein search processes mediated by chromatin topology

  ORAL

  March 19, 2025, 8:36 PM – March 19, 2025, 8:48 PM

  Publication: Protein search processes mediated by chromatin topology<br>Shuvadip Dutta, R. Adarshkrishnan, Ranjith Padinhateeri, Mithun K. Mitra<br>bioRxiv 2023.12.12.571394; doi: https://doi.org/10.1101/2023.12.12.571394

  Presenters

  • Shuvadip Dutta

    Department of Physics, Indian Institute of Technology Bombay, Mumbai 400076, India

  Authors

  • Shuvadip Dutta

    Department of Physics, Indian Institute of Technology Bombay, Mumbai 400076, India

  • Adarshkrishnan R.

    Department of Physics, Indian Institute of Technology Bombay, Mumbai 400076, India

  • Ranjith Padinhateeri

    Department of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Mumbai 400076, India

  • Mithun K Mitra

    Department of Physics, Indian Institute of Technology Bombay, Mumbai 400076, India

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• A minimal model for the role of Rim4-mRNA aggregates in regulating meiotic exit in budding yeast

  ORAL

  March 19, 2025, 8:48 PM – March 19, 2025, 9:00 PM

  Presenters

  • Viridiana Abigail Marquez Davila

    Indiana University Bloomington

  Authors

  • Viridiana Abigail Marquez Davila

    Indiana University Bloomington

  • Sima Setayeshgar

    Indiana University, Bloomington, Indiana University Bloomington

  • Renyu Wang

    Peking Univ

  • Soni Lacefield

    Geisel School of Medicine at Dartmouth

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