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Epithelial Morphogenesis – from 3D cell shapes to 3D tissue shape

ORAL · Invited

Abstract

Epithelia are fundamental building blocks of life, playing pivotal roles in morphogenesis and are at the origin of most cancers. This talk will explore epithelial organization across scales, from individual cell geometry to tissue-level architecture. I will introduce theoretical work that sheds light on long-standing, unexplained phenomena in epithelial cell organization [1-3], enabling the development of advanced 2D and 3D simulation tools, PolyHoop [4] and SimuCell [5]. These tools allow for data-driven simulations of epithelial dynamics, advancing our understanding of both development and disease. Additionally, I will examine how chemical gradients drive precise epithelial patterning during development [6, 7] and demonstrate how their interplay with geometric and mechanical constraints shapes epithelial morphogenesis. Case studies include neural tube formation [8], lung branching morphogenesis [9], nephrogenesis [10], and bladder cancer progression [11]. By integrating experimental insights with computational approaches, this work offers a comprehensive view of the mechanisms driving epithelial morphogenesis in health and disease.

Publication: 1. Vetter, R., et al., Aboave-Weaire's law in epithelia results from an angle constraint in contiguous polygonal lattices. bioRxiv, 2019.<br>2. Kokic, M., et al., Minimisation of surface energy drives apical epithelial organisation and gives rise to Lewis' law. bioRxiv, 2019.<br>3. Gomez, H.F., et al., cell neighbour dynamics in growing pseudostratified epithelia. Elife, 2021. 10.<br>4. Vetter, R., S.V.M. Runser, and D. Iber, PolyHoop: Soft particle and tissue dynamics with topological transitions. Computer Physics Communications, 2024. 299.<br>5. Runser, S., R. Vetter, and D. Iber, SimuCell: three-dimensional simulation of tissue mechanics with cell polarization. Nat Comput Sci, 2024.<br>6. Vetter, R. and D. Iber, Precision of morphogen gradients in neural tube development. Nat Commun, 2022. 13(1): p. 1145.<br>7. Iber, D. and R. Vetter, Relationship between epithelial organization and morphogen interpretation. Curr Opin Genet Dev, 2022. 75: p. 101916.<br>8. de Goederen, V., et al., Hinge point emergence in mammalian spinal neurulation. Proceedings of the National Academy of Sciences, 2022. 119(20): p. e2117075119.<br>9. Iber, D., The control of lung branching morphogenesis. Curr Top Dev Biol, 2021. 143: p. 205-237.<br>10. Mederacke, M., et al., Geometric effects position renal vesicles during kidney development. Cell Rep, 2023. 42(12): p. 113526.<br>11. Lampart, F.L., et al., Morphometry and mechanical instability at the onset of epithelial bladder cancer. bioRxiv, 2023; accepted in Nature Physics

Presenters

  • Dagmar Iber

    ETH Zürich

Authors

  • Dagmar Iber

    ETH Zürich