Microbial Communities I

Presentations

• Statistical physics of microbial ecology in the gut

  ORAL · Invited

  March 18, 2025, 11:00 AM – March 18, 2025, 11:36 AM

  Presenters

  • Kerwyn C Huang

    Stanford University

  Authors

  • Kerwyn C Huang

    Stanford University

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• How do biofilms defend public goods? Mechanisms of protection against planktonic invasion

  ORAL

  March 18, 2025, 11:36 AM – March 18, 2025, 11:48 AM

  Presenters

  • Merrill E Asp

    Yale University

  Authors

  • Merrill E Asp

    Yale University

  • Jing Yan

    Yale University

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• Biofilm growth in confinement

  ORAL

  March 18, 2025, 11:48 AM – March 18, 2025, 12:00 PM

  Presenters

  • Zehao Chen

    Yale University

  Authors

  • Zehao Chen

    Yale University

  • Amir A Pahlavan

    Yale University

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• Quantifying the metabolic fluxes that govern the microbial ecosystem of the human intestine

  ORAL

  March 18, 2025, 12:00 PM – March 18, 2025, 12:12 PM

  Publication: Preprint: https://doi.org/10.1101/2024.01.05.573977

  Presenters

  • Jonas Cremer

    Stanford University

  Authors

  • Jonas Cremer

    Stanford University

  • Markus Arnoldini

    ETH Zurich

  • Richa Sharma

    Stanford University

  • Claudia Moresi

    ETH Zurich

  • Griffin Chure

    Stanford University

  • Julien Chabbey

    ETZ Zurich

  • Emma Slack

    ETH Zurich

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• Speaker Moved to "Microbial Communities II"

  COFFEE_KLATCH

  March 18, 2025, 12:12 PM – March 18, 2025, 12:24 PM

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• Predicting Microbial Community Compositions and Oil Contamination in Water Samples Using Neural Networks and Generative Models

  ORAL

  March 18, 2025, 12:24 PM – March 18, 2025, 12:36 PM

  Presenters

  • Tong Gao

    Department of Physics, Michigan Technological University, Michigan Technological University

  Authors

  • Tong Gao

    Department of Physics, Michigan Technological University, Michigan Technological University

  • Isaac Bigcraft

    Department of Biological Sciences, Michigan Technological University

  • Stephen Techtmann

    Department of Biological Sciences, Michigan Technological University

  • Issei Nakamura

    Michigan Technological University, Department of Physics, Michigan Technological University

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• Role of space filling in pattern formation in bacterial biofilms

  ORAL

  March 18, 2025, 12:36 PM – March 18, 2025, 12:48 PM

  Presenters

  • Melika Gorgi

    University of California, Irvine

  Authors

  • Melika Gorgi

    University of California, Irvine

  • Albert Siryaporn

    University of California, Irvine

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• Relating Compositional & Functional Data in Microbial Soil Communities

  ORAL

  March 18, 2025, 12:48 PM – March 18, 2025, 1:00 PM

  Presenters

  • Lucas Graham

    Washington University, St. Louis

  Authors

  • Lucas Graham

    Washington University, St. Louis

  • Kiseok K Lee

    University of Chicago

  • Seppe Kuehn

    University of Chicago

  • Mikhail Tikhonov

    Washington University, St. Louis

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• Competition strategies driving resource partitioning in chitin degrading communities

  ORAL

  March 18, 2025, 1:00 PM – March 18, 2025, 1:12 PM

  Presenters

  • Ghita Guessous

    UCSD

  Authors

  • Ghita Guessous

    UCSD

  • Sammy Pontrelli

    ETH Zurich

  • Uwe Sauer

    ETH Zurich

  • Terence T. Hwa

    University of California, San Diego

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• Biofilm dynamics under starvation

  ORAL

  March 18, 2025, 1:12 PM – March 18, 2025, 1:24 PM

  Publication: [1] P. Bravo, et al., PNAS (2023)<br>[2] A. Pokhrel, et al., Nat. Phys. 20, 1509–1517 (2024)<br>

  Presenters

  • Maryam Sadat Hejri Bidgoli

    Georgia Institute of Technology

  Authors

  • Maryam Sadat Hejri Bidgoli

    Georgia Institute of Technology

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• Non-Optical, Label-free Electrical Capacitance Imaging of Microorganisms

  ORAL

  March 18, 2025, 1:24 PM – March 18, 2025, 1:36 PM

  Publication: Incandela JT, Hu K, Joshi P, Rosenstein JK, Larkin JW. Non-Optical, Label-free Electrical Capacitance Imaging of Microorganisms. bioRxiv [Preprint]. 2024 Sep 25:2024.09.25.615041. doi: 10.1101/2024.09.25.615041. PMID: 39386503; PMCID: PMC11463361.<br><br>Abdelatty M, Incandela J, Hu K, Larkin JW, Reda S, Rosenstein JK. Microscale 3-D Capacitance Tomography with a CMOS Sensor Array. IEEE Biomed Circuits Syst Conf. 2023 Oct;2023:10.1109/biocas58349.2023.10388576. doi: 10.1109/biocas58349.2023.10388576. Epub 2024 Jan 18. PMID: 38384749; PMCID: PMC10880799.<br><br>K. Hu, J. Incandela, X. Lian, J. W. Larkin and J. K. Rosenstein, "A 13.1mm2 512 × 256 Multimodal CMOS Array for Spatiochemical Imaging of Bacterial Biofilms," 2022 IEEE Custom Integrated Circuits Conference (CICC), Newport Beach, CA, USA, 2022, pp. 1-2, doi: 10.1109/CICC53496.2022.9772787.

  Presenters

  • Joseph Thomas Incandela

    Boston University

  Authors

  • Joseph Thomas Incandela

    Boston University

  • Kangping Hu

    Brown University

  • Pushkaraj Joshi

    Brown University

  • Jacob Rosenstein

    Brown University

  • Joe Larkin

    Boston University

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• Microbacterial modelling across the scales: From single cells to inter-kingdom communities

  ORAL

  March 18, 2025, 1:36 PM – March 18, 2025, 1:48 PM

  Presenters

  • Connah G Johnson

    Pacific Northwest Natl Lab

  Authors

  • Connah G Johnson

    Pacific Northwest Natl Lab

  View abstract →