Cell Fate Transitions

Presentations

• 3D genome organization in the epithelial-mesenchymal transition spectrum

  ORAL · Invited

  March 8, 2023, 2:30 PM – March 8, 2023, 3:06 PM

  Presenters

  • Ruby Huang

    National Taiwan University

  Authors

  • Ruby Huang

    National Taiwan University

  View abstract →

• Inferring single-cell transcriptomic dynamics with structured dynamical representations of RNA velocity

  ORAL

  March 8, 2023, 3:06 PM – March 8, 2023, 3:18 PM

  Publication: Pre-print, https://www.biorxiv.org/content/10.1101/2022.08.22.504858v1.abstract

  Presenters

  • Spencer G Farrell

    University of Toronto

  Authors

  • Spencer G Farrell

    University of Toronto

  • Madhav Mani

    Northwestern University

  • Sidhartha Goyal

    University of Toronto, Univ of Toronto

  View abstract →

• Bursty RNA Velocity of Gene Programs for Trajectory Inference

  ORAL

  March 8, 2023, 3:18 PM – March 8, 2023, 3:30 PM

  Presenters

  • Frank Gao

    University of Chicago

  Authors

  • Frank Gao

    University of Chicago

  • Suriyanarayanan Vaikuntanathan

    University of Chicago

  • Samantha Riesenfeld

    University of Chicago

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• Cancer cell states in a perturbed epigenetic landscape

  ORAL

  March 8, 2023, 3:30 PM – March 8, 2023, 3:42 PM

  Presenters

  • Andreas Kraemer

    QIAGEN

  Authors

  • Andreas Kraemer

    QIAGEN

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• Bifurcation and multistability in three-gene-driven network models

  ORAL

  March 8, 2023, 3:42 PM – March 8, 2023, 3:54 PM

  Presenters

  • Rebecca J Rousseau

    Caltech

  Authors

  • Rebecca J Rousseau

    Caltech

  • Rob Phillips

    Caltech

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• Single cell dynamics of the Lac operon induction

  ORAL

  March 8, 2023, 3:54 PM – March 8, 2023, 4:06 PM

  Presenters

  • Louis B Cortes

    Cornell University

  Authors

  • Louis B Cortes

    Cornell University

  • Guillaume Lambert

    Cornell University

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• Coupling between epithelial-to-mesenchymal transition and cell cycle progression

  ORAL

  March 8, 2023, 4:06 PM – March 8, 2023, 4:18 PM

  Publication: Hu et al., Epithelial-mesenchymal transition couples with both G1/S and G2/M arrest, to be submitted.

  Presenters

  • Jianhua Xing

    University of Pittsburgh

  Authors

  • Jianhua Xing

    University of Pittsburgh

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• A novel FRET-based reporter for real time interrogation of p38-mediated stress response in human cells

  ORAL

  March 8, 2023, 4:18 PM – March 8, 2023, 4:30 PM

  Presenters

  • Thomas E Kuhlman

    University of California, Riverside

  Authors

  • Thomas E Kuhlman

    University of California, Riverside

  • Michael Worcester

    University of California, Riverside

  View abstract →

• scTOP: physics-inspired order parameters for cell fate classification and visualization of single cells

  ORAL

  March 8, 2023, 4:30 PM – March 8, 2023, 4:42 PM

  Publication: Durable alveolar engraftment of PSC-derived lung epithelial cells into immunocompetent mice, https://doi.org/10.1101/2022.07.26.501591

  Presenters

  • Maria Yampolskaya

    Boston University

  Authors

  • Maria Yampolskaya

    Boston University

  • Pankaj Mehta

    Boston University

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• Phenotypic consequences of gene expression driven by positive and negative feedback gene circuits.

  ORAL

  March 8, 2023, 4:42 PM – March 8, 2023, 4:54 PM

  Presenters

  • Rafa? Krzyszto?

    Stony Brook University

  Authors

  • Rafa? Krzyszto?

    Stony Brook University

  • Joshua Azukas

    Stony Brook University

  • Yiming Wan

    Stony Brook University

  • Helmut H Strey

    Stony Brook University (SUNY)

  • Gabor Balazsi

    Stony Brook University (SUNY), Laufer Center for Physical and Quantitative Biology, Stony Brook University

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• Critical growth of cerebral tissue in organoids: theory and experiments

  ORAL

  March 8, 2023, 4:54 PM – March 8, 2023, 5:06 PM

  Presenters

  • Egor I Kiselev

    Technion – Israel Institute of Technology

  Authors

  • Egor I Kiselev

    Technion – Israel Institute of Technology

  • Arndt von Haeseler

    University of Vienna

  • Florian Pflug

    Okinawa institute of science and technology

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• Models of branching morphogenesis of dendrites in fly sensory neurons

  ORAL

  March 8, 2023, 5:06 PM – March 8, 2023, 5:18 PM

  Presenters

  • Xiaoyi Ouyang

    Yale University

  Authors

  • Xiaoyi Ouyang

    Yale University

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• Minimal model for emergent spatiotemporal patterning of synthetic Notch expression in vivo

  ORAL

  March 8, 2023, 5:18 PM – March 8, 2023, 5:30 PM

  Presenters

  • Jonathan E Dawson

    University of Rostock

  Authors

  • Jonathan E Dawson

    University of Rostock

  • Paul Langridge

    Department of Biology, Augusta University

  • Abdul N Malmi Kakkada

    Augusta University, Department of Chemistry and Physics, Augusta University

  View abstract →