Multi-Scale Modelling of Biological Cells: from Atoms to Whole Cells

Presentations

• Active transport and self-organization in living cells

  ORAL · Invited

  March 7, 2023, 2:30 PM – March 7, 2023, 3:06 PM

  Presenters

  • Michael J Shelley

    Courant Inst. (NYU), Flatiron Inst. (SF), Flat Iron Institute

  Authors

  • Michael J Shelley

    Courant Inst. (NYU), Flatiron Inst. (SF), Flat Iron Institute

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• Individual-based Biophysical Modeling of Spatial Dynamics of Chemotactic Microbial Populations

  ORAL

  March 7, 2023, 3:06 PM – March 7, 2023, 3:18 PM

  Publication: C. Ni and T. Lu (2022) Individual-based modeling of spatial dynamics of chemotactic microbial populations. ACS Synthetic Biology, doi: 10.1021/acssynbio.2c00322.

  Presenters

  • Congjian Ni

    University of Illinois at Urbana-Champaign

  Authors

  • Congjian Ni

    University of Illinois at Urbana-Champaign

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• Combining mechanistic and statistical models to enable Nascent Chain Tracking for multiple mRNAs using a single color

  ORAL

  March 7, 2023, 3:18 PM – March 7, 2023, 3:30 PM

  Publication: 1. Planned paper in Frontiers in Cell and Developmental Biology

  Presenters

  • William S Raymond

    Colorado State University

  Authors

  • William S Raymond

    Colorado State University

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• Landscapes of Genomic Architecture Across Evolution

  ORAL · Invited

  March 7, 2023, 3:30 PM – March 7, 2023, 4:06 PM

  Presenters

  • Michele Di Pierro

    Northeastern University

  Authors

  • Michele Di Pierro

    Northeastern University

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• Stochastic Models of Cellular Survival and Evolution

  ORAL

  March 7, 2023, 4:06 PM – March 7, 2023, 4:18 PM

  Presenters

  • Christopher R Siebor

    Laufer Center for Physical and Quantitative Biology, Stony Brook University; Physics Department, Stony Brook University

  Authors

  • Christopher R Siebor

    Laufer Center for Physical and Quantitative Biology, Stony Brook University; Physics Department, Stony Brook University

  • Gabor Balazsi

    Stony Brook University (SUNY), Laufer Center for Physical and Quantitative Biology, Stony Brook University

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• Oxygen delivery to tissue via a complex branched cellular network

  ORAL

  March 7, 2023, 4:18 PM – March 7, 2023, 4:30 PM

  Presenters

  • Tatyana Gavrilchenko

    Simons Foundation

  Authors

  • Tatyana Gavrilchenko

    Simons Foundation

  • Pauline Hansen

    Princeton University

  • Daniel Fortunato

    Flatiron Institute

  • Alex Barnett

    Flatiron Institute

  • Stanislav Y Shvartsman

    Princeton University

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• Multiscale Model of Antiviral Timing, Potency, and Heterogeneity Effects on an Epithelial Tissue Patch Infected by SARS-CoV-2

  ORAL

  March 7, 2023, 4:30 PM – March 7, 2023, 4:42 PM

  Publication: Ferrari Gianlupi, J.; Mapder, T.; Sego, T.J.; Sluka, J.P.; Quinney, S.K.; Craig, M.; Stratford, R.E., Jr.; Glazier, J.A. Multiscale Model of Antiviral Timing, Potency, and Heterogeneity Effects on an Epithelial Tissue Patch Infected by SARS-CoV-2. Viruses 2022, 14, 605. https://doi.org/10.3390/v14030605

  Presenters

  • Juliano Ferrari Gianlupi

    Indiana University Bloomington

  Authors

  • Juliano Ferrari Gianlupi

    Indiana University Bloomington

  • Tarunendu Mapder

    Indiana University School of Medicine

  • T.J. Sego

    Indiana University Bloomington

  • James P Sluka

    Indiana University Bloomington

  • Sara K Quinney

    Indiana University School of Medicine

  • Morgan Craig

    Université de Montréal

  • Robert E Stratford, Jr

    Indiana University School of Medicine

  • James A Glazier

    Indiana Univ - Bloomington

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• Ab Initio investigation of bio-interfaces

  ORAL

  March 7, 2023, 4:42 PM – March 7, 2023, 4:54 PM

  Presenters

  • Deniz Cakir

    University of North Dakota

  Authors

  • Deniz Cakir

    University of North Dakota

  • Ashan Fernando Warnakulasuriya

    University of North Dakota

  • Mark Hoffmann

    University of North Dakota

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• Contrasting self-assembly pathways at the membrane

  ORAL

  March 7, 2023, 4:54 PM – March 7, 2023, 5:06 PM

  Publication: Guo, S., Sodt, A.J., & Johnson, M.E.* Large self-assembled clathrin lattices spontaneously disassemble without sufficient adaptor proteins. PLoS Comp Biol. 18, e1009969 (2022).

  Presenters

  • Margaret E Johnson

    Johns Hopkins University

  Authors

  • Margaret E Johnson

    Johns Hopkins University

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• Enhancement of Information Transmission Efficiency via Feedback in Synapses of the Fly Early Visual System

  ORAL

  March 7, 2023, 5:06 PM – March 7, 2023, 5:18 PM

  Presenters

  • Golam M Kashef

    Indiana University Bloomington

  Authors

  • Golam M Kashef

    Indiana University Bloomington

  • Robert de Ruyter

    Indiana Univ - Bloomington

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• Energetic and kinetic criteria for assembling HIV-1 Gag lattices in solution

  ORAL

  March 7, 2023, 5:18 PM – March 7, 2023, 5:30 PM

  Presenters

  • Yian Qian

    Johns Hopkins University

  Authors

  • Yian Qian

    Johns Hopkins University

  • Margaret E Johnson

    Johns Hopkins University

  • Daniel Evans

    Johns Hopkins University

  View abstract →