Molecular Machines I

Presentations

• Probing Allosteric Communication of Bacterial ClpP Peptidase using Dynamic Network Analysis and Machine Learning

  ORAL

  March 6, 2023, 6:00 PM – March 6, 2023, 6:12 PM

  Presenters

  • Ashan Dayananda

    University Of Cincinnati

  Authors

  • Ashan Dayananda

    University Of Cincinnati

  • Timothy S. H Dennison

    University of Cincinnati

  • Riina Tehver

    Denison University

  • George N Stan

    University of Cincinnati

  View abstract →

• Superdiffusive Motion of Influenza A Viruses on Surfaces

  ORAL

  March 6, 2023, 6:12 PM – March 6, 2023, 6:24 PM

  Presenters

  • Siddhansh Agarwal

    University of California, Berkeley

  Authors

  • Siddhansh Agarwal

    University of California, Berkeley

  • Greg Huber

    Chan Zuckerberg Biohub

  • Daniel A Fletcher

    University of California, Berkeley

  View abstract →

• Stochastic dynamics and ribosome-RNAP interactions in Transcription-Translation Coupling

  ORAL

  March 6, 2023, 6:24 PM – March 6, 2023, 6:36 PM

  Publication: Li and Chou, Stochastic dynamics and ribosome-RNAP interactions in transcription-translation coupling, Biophysical Journal (2022), https://doi.org/10.1016/j.bpj.2022.09.041

  Presenters

  • Xiangting Li

    University of California, Los Angeles

  Authors

  • Xiangting Li

    University of California, Los Angeles

  • Tom Chou

    University of California, Los Angeles

  View abstract →

• The Mammalian Meiotic Spindle: A Living Material

  ORAL

  March 6, 2023, 6:36 PM – March 6, 2023, 6:48 PM

  Presenters

  • Colm P Kelleher

    Harvard University

  Authors

  • Colm P Kelleher

    Harvard University

  • Daniel J Needleman

    Harvard University

  View abstract →

• Protein remodeling and translocation mediated by AAA+ nanomachines in the degradation and disaggregation pathways: computational studies

  ORAL · Invited

  March 6, 2023, 6:48 PM – March 6, 2023, 7:24 PM

  Presenters

  • George N Stan

    University of Cincinnati

  Authors

  • George N Stan

    University of Cincinnati

  View abstract →

• Probing Severing Enzyme's Functional States with Molecular Simulations and Machine Learning Approaches

  ORAL

  March 6, 2023, 7:24 PM – March 6, 2023, 7:36 PM

  Publication: Varikoti, R. A.; Fonseka, H. Y. Y.; Kelly, M. S.; Javidi, A.; Damre, M.; Mullen, S.;<br>Nugent, J. L. I.; Gonzales, C. M.; Stan, G.; Dima, R. Exploring the Effect of Mechanical<br>Anisotropy of Protein Structures in the Unfoldase Mechanism of AAA+ Molecular<br>Machines. nanomaterials 2022, 12

  Presenters

  • Maria S Kelly

    University of Cincinnati

  Authors

  • Maria S Kelly

    University of Cincinnati

  View abstract →

• Determining quaternary allostery of the spastin motor through bioinformatics and graph networks

  ORAL

  March 6, 2023, 7:36 PM – March 6, 2023, 7:48 PM

  Presenters

  • Amanda C Macke

    University Of Cincinnati

  Authors

  • Amanda C Macke

    University Of Cincinnati

  • Maria S Kelly

    University of Cincinnati

  • Shehani Kahawatte

    University of Cincinnati

  • Abigail Miller

    University of Cincinnati

  • Ruxandra Dima

    University of Cincinnati

  View abstract →

• Effect of molecular walkers on microtubule substrates

  ORAL

  March 6, 2023, 7:48 PM – March 6, 2023, 8:00 PM

  Presenters

  • Jutta Luettmer-Strathmann

    University of Akron

  Authors

  • Jutta Luettmer-Strathmann

    University of Akron

  • Matthew Murrow

    Vanderbilt University

  View abstract →

• Kinesin Model for Brownian Dynamics Simulations of Stepping Efficiency

  ORAL

  March 6, 2023, 8:00 PM – March 6, 2023, 8:12 PM

  Presenters

  • Matthew Murrow

    Vanderbilt University

  Authors

  • Matthew Murrow

    Vanderbilt University

  • Jutta Luettmer-Strathmann

    University of Akron

  View abstract →

• Inferring subsystem efficiencies in bipartite molecular machines

  ORAL

  March 6, 2023, 8:12 PM – March 6, 2023, 8:24 PM

  Publication: "Inferring Subsystem Efficiencies in Bipartite Molecular Machines", M.P. Leighton, D.A. Sivak, Under Review, Arxiv Preprint: https://arxiv.org/abs/2202.13992.

  Presenters

  • Matthew Leighton

    Simon Fraser University

  Authors

  • Matthew Leighton

    Simon Fraser University

  • David A Sivak

    Simon Fraser University

  View abstract →