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V: Molecular Biophysics

FOCUS · AA09 · ID: 1089959

Presentations

  • Following the binding and dissociation kinetics of unlabeled transcription factors at the single molecule level

    ORAL

    –

    Publication: H. Khamis, S. Rudnizky, P. Melamed and A. Kaplan, "Single molecule characterization of the binding kinetics of a transcription factor and its modulation by DNA sequence and methylation", Nucleic Acids Research (2021)

    Presenters

    • Ariel Kaplan

      Technion - Israel Institute of Technology

    Authors

    • Ariel Kaplan

      Technion - Israel Institute of Technology

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  • Importance of Many Body Interactions in DNA Synthesis Initiation

    ORAL

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    Publication: Li A.W.H., Zabrady K., Bainbridge L.J., Zabrady M., Naseem-Khan S., Berger M.B., Kolesar P., Cisneros G.A., Doherty, A.J. "Molecular basis for the initiation of DNA primer synthesis", Nature, DOI:10.1038/s41586-022-04695-0, 2022.

    Presenters

    • G. Andrés A Cisneros

      University of Texas at Dallas

    Authors

    • G. Andrés A Cisneros

      University of Texas at Dallas

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  • Investigating recognition and sequence preference of Kaiso interactions with methylated DNA

    ORAL

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    Publication: The manuscript entitled "A 5'-flanking C/G pair at the core region enhances the recognition and binding of Kaiso to methylated DNA" is submitted (under review) to Journal of Chemical Information and Modeling, ACS publication.

    Presenters

    • Bidhya Thapa

      Tribhuvan University, Kirtipur, Nepal., Tribhuvan University

    Authors

    • Bidhya Thapa

      Tribhuvan University, Kirtipur, Nepal., Tribhuvan University

    • Narayan P Adhikari

      Central Department of Physics Tribhuvan University

    • Purushottam TIwari

      Georgetown University, Washington D.C., USA

    • Prem P Chapagain

      Florida International University, Miami, Florida, USA

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  • Amino acid characteristics in protein native state structures

    ORAL

    –

    Publication: Tatjana Škrbic, Trinh X. Hoang, Achille Giacometti, Amos Maritan and Jayanth R. Banavar, "Amino acid characteristics in protein native state structures", in preparation

    Presenters

    • Tatjana Škrbic

      Department of Molecular Sciences and Nanosystems, Ca' Foscari University of Venice, Via Torino 155, 30170 Venezia Mestre, Italy

    Authors

    • Tatjana Škrbic

      Department of Molecular Sciences and Nanosystems, Ca' Foscari University of Venice, Via Torino 155, 30170 Venezia Mestre, Italy

    • Achille Giacometti

      Department of Molecular Sciences and Nanosystems, Ca' Foscari University of Venice, Via Torino 155, 30170 Venezia Mestre, Italy

    • Amos Maritan

      Department of Physics and Astronomy, University of Padua, Via Marzollo 8, 35131 Padova, Italy

    • Trinh X Hoang

      Institute of Physics, Vietnam Academy of Science and Technology, 10 Dao Tan, Ba Dinh, Hanoi 11108, Vietnam

    • Jayanth R Banavar

      Department of Physics and Institute of Fundamental Science, University of Oregon, Eugene, Oregon 97403, USA

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  • Mode projected dynamics of globular and membrane proteins

    ORAL

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    Publication: Thirumuruganandham, S.P., Urbassek, H.M. Low-frequency vibrational modes and infrared absorbance of red, blue and green opsin. J Mol Model 15, 959–969 (2009). https://doi.org/10.1007/s00894-008-0446-1

    Presenters

    • Saravana Prakash Thirumuruganandham

      Centro de Investigación de Ciencias Humanas y de la Educació, FITIC, Faculty of Industrial engineering

    Authors

    • Saravana Prakash Thirumuruganandham

      Centro de Investigación de Ciencias Humanas y de la Educació, FITIC, Faculty of Industrial engineering

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