Soft meshes for soft matter: A Molecular Dynamics approach to simulating continuum models of fluid bilayer vesicles
ORAL
Abstract
The spontaneous curvature model or Helfrich's curvature model is widely used to describe the shape changes and behavior of fluid membranes. The discretization of Helfrich's continuum model on triangulated meshes requires a mesh with a uniform distribution of vertices. The dynamic trian- gulation algorithm is the state of the art method to simulate mesh shape changes while maintaining a uniform vertex distribution. The dynamic triangulation method is used in Monte Carlo simula- tions but is not compatible with Molecular Dynamics. Here we introduce a Molecular Dynamics simulation method called dynamic area redistribution that can be used to simulate the fluid behavior of biomembranes using two-dimensional meshes with fixed connectivity. The application of an MD compatible method for fluid membranes is discussed, and a simple red blood cell composite model is proposed.
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Publication: Submitted and under review: APS Phys Rev E
Presenters
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Ali Farnudi
École Normale Supérieure de Lyon
Authors
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Ali Farnudi
École Normale Supérieure de Lyon
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Ralf Everaers
Université de Lyon, École Normale Supérieure (ENS) de Lyon, Laboratoire de Physique and Centre Blaise Pascal de l'ENS de Lyon, F-69342 Lyon, France, Ecole normale supérieure de Lyon
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Mohammad Reza Ejtehadi
Sharif University of Technology