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Physics of Proteins I: Structure & Dynamics of Proteins

FOCUS · A08 · ID: 1067854

Presentations

  • Modeling Protein Dynamics from Brownian Motions to Transcription Regulation

    ORAL · Invited

    –

    Publication: 1. Liqiang Dai, Yongping Xu, Zhenwei Du, Xiao-dong Su*, and Jin Yu*. Revealing Atomic-scale Molecular Diffusion of a Plant Transcription Factor WRKY Domain Protein along DNA. Proc Natl Acad Sci USA 118 (23) e2102621118, 2021<br>2. Chao E, Liqiang Dai, Jiaqi Tian, Lin-Tai Da, and Jin Yu*. Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion. J Visualized Experiment 181:e63406, 2022<br>3. Liqiang Dai and Jin Yu*. Inchworm stepping of Myc-Max heterodimer protein diffusion along DNA. Biochemical and Biophysical Research Communication 533: 97, 2020<br>4. Lin-Tai Da, Chao E, Yao Shuai, Shaogui Wu, Xiao-Dong Su, and Jin Yu*. T7 RNA Polymerase Translocation is Facilitated by Helix Opening on the Fingers Domain that may also Prevent Backtracking. Nucleic Acids Research 45: 7909, 2017<br>5. Moises E Romero, Chunhong Long, Daniel La Rocco, Anusha M Keerthi, Dajun Xu, and Jin Yu*. Probing remdesivir nucleotide analogue insertion to SARS-CoV-2 RNA dependent RNA polymerase in viral replication. Molecular Systems Design & Engineering 6: 888, 2021

    Presenters

    • Jin Yu

      University of California-Irvine, UC Irvine

    Authors

    • Jin Yu

      University of California-Irvine, UC Irvine

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  • Binding mechanism of different variants of SARS-CoV(-2) virus with hACE2 receptor protein

    ORAL

    –

    Presenters

    • Narayan P Adhikari

      Central Department of Physics Tribhuvan University

    Authors

    • Narayan P Adhikari

      Central Department of Physics Tribhuvan University

    • Bidhya Thapa

      Tribhuvan University, Kirtipur, Nepal., Tribhuvan University

    • Shyam P Khanal

      Central Department of Physics Tribhuvan University Kathmandu

    • Lokendra S Dhami

      Central Department of Physics Tribhuvan University Kathmandu

    • Jhulan Powrel

      Central Department of Physics Tribhuvan University Kathmandu

    • Prabin Dahal

      Central Department of Physics Tribhuvan University Kathmandu

    • Rajendra P Koirala

      Tribhuvan University

    • Ashmita Shah

      Central Department of Physics Tribhuvan University Kathmandu

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  • Geometric Signatures of Switching Behavior in Mechanobiology

    ORAL

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    Publication: Preprint (submitted): https://arxiv.org/abs/2209.03324<br>Title: Geometric Signatures of Switching Behavior in Mechanobiology<br>Authors: Casey O. Barkan and Robijn F. Bruinsma

    Presenters

    • Casey Barkan

      University of California, Los Angeles

    Authors

    • Casey Barkan

      University of California, Los Angeles

    • Robijn F Bruinsma

      University of California, Los Angeles

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  • Dynamic Allosteric Modulation of G-Protein-Coupled Receptors

    ORAL · Invited

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    Publication: 1 Draper-Joyce, C. J. et al. Positive allosteric mechanisms of adenosine A1 receptor-mediated analgesia. Nature 597, 571-576 (2021). <br>2 Vuckovic, Z. et al. Pharmacological hallmarks of allostery at the M4 muscarinic receptor elucidated through structure and dynamics. BioRxiv, https://doi.org/10.1101/2022.09.27.509640 (2022).<br>

    Presenters

    • Yinglong Miao

      U Kansas

    Authors

    • Yinglong Miao

      U Kansas

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  • Deciphering active site strain

    ORAL

    –

    Presenters

    • Wouter D Hoff

      Okahoma State University

    Authors

    • Wouter D Hoff

      Okahoma State University

    • Masashi Unno

      Saga University

    • Tomotsumi Fujisawa

      Saga University

    • Takahito Shingae

      Saga University

    • Jie Ren

      Oklahoma State University

    • Shojiro Haraguchi

      Saga University

    • Takeshi Hanamoto

      Saga University

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