APS Logo

Dynein-Inspired Multilane Exclusion Process with Open Boundary Conditions

ORAL

Abstract

Motivated by the sidewise motions of dynein motors shown in experiments, we use a variant of the exclusion process to model the multistep dynamics of dyneins on a cylinder with open ends. Due to the varied step sizes of the particles in a quasi-two-dimensional topology, we observe the emergence of a novel phase diagram depending on the various load conditions. Under high-load conditions, our numerical findings yield results similar to the TASEP model with the presence of all three standard TASEP phases, namely the low-density (LD), high-density (HD), and maximal-current (MC) phases. However, for medium- to low-load conditions, for all chosen influx and outflux rates, we only observe the LD and HD phases, and the maximal-current phase disappears. Further, we also measure the dynamics for a single dynein particle which is logarithmically slower than a TASEP particle with a shorter waiting time. Our results also confirm experimental observations of the dwell time distribution: The dwell time distribution for dyneins is exponential in less crowded conditions, whereas a double exponential emerges under overcrowded conditions.

Publication: Riya Nandi and Priyanka, J. Stat. Phys vol.182 (2021) <br>Riya Nandi, Uwe C Tauber, and Priyanka, Entropy, vol 23(10) (2021)

Presenters

  • Priyanka Priyanka

    University of Illinois Urbana-Champaign

Authors

  • Priyanka Priyanka

    University of Illinois Urbana-Champaign

  • Uwe C Tauber

    Virginia Tech

  • Riya Nandi

    University of Geneva