Molecular Machines II

Presentations

• Global conformational changes and their allosteric control by ubiquitin regulate protein degradation of the 26S proteasome molecular machine

  ORAL · Invited

  March 16, 2022, 12:30 PM – March 16, 2022, 1:06 PM

  Presenters

  • Andreas Martin

    UC Berkeley

  Authors

  • Andreas Martin

    UC Berkeley

  • Zaw Htet

    HHMI, UC Berkeley

  • Erik Jonsson

    UC Berkeley

  • Erika Lopez-Alfonzo

    UC Berkeley

  • Ken Dong

    HHMI, UC Berkeley

  • Jared Bard

    University of Chicago

  View abstract →

• Asymmetric Conformational Dynamics of the ClpB Disaggregase Nanomachine

  ORAL

  March 16, 2022, 1:06 PM – March 16, 2022, 1:18 PM

  Publication: Damre, Mangesh, Ashan Dayananda, Rohith Anand Varikoti, George Stan, and Ruxandra I. Dima. "Factors underlying asymmetric pore dynamics of disaggregase and microtubule-severing AAA+ machines." Biophysical Journal 120, no. 16 (2021): 3437-3454.

  Presenters

  • Ashan Dayananda

    University Of Cincinnati

  Authors

  • Ashan Dayananda

    University Of Cincinnati

  • Ruxandra I Dima

    University Of Cincinnati

  • George N Stan

    University Of Cincinnati

  View abstract →

• A General Bayesian Framework for Learning Molecular Kinetics From Single Photon Arrivals.

  ORAL

  March 16, 2022, 1:18 PM – March 16, 2022, 1:30 PM

  Publication: Planned Publication: Ayush Saurabh, Oliver Stach, Ioannis Sgouralis, Daniel Nettels, Ben Schuler, and Steve Presse. A General Bayesian Framework for Learning Molecular Kinetics From Single Photon Arrivals.

  Presenters

  • Ayush Saurabh

    Arizona State University

  Authors

  • Ayush Saurabh

    Arizona State University

  • Steve Presse

    ASU

  • Ioannis Sgouralis

    Arizona State University

  View abstract →

• Ambigrammatic Viruses

  ORAL

  March 16, 2022, 1:30 PM – March 16, 2022, 1:42 PM

  Publication: An Exploration of Ambigrammatic Sequences in Narnaviruses,<br>J. L. DeRisi, G. Huber, A. Kistler, H. Retallack, M. Wilkinson and D. Yllanes, Sci. Rep., 9, 17982, (2019).<br>Polysomally Protected Viruses,<br>M. Wilkinson, D. Yllanes and G. Huber, Phys. Biol., 18, 046009, (2021).<br>Polymorphism of Genetic Ambigrams,<br>G. Dudas, G. Huber, M. Wilkinson and D. Yllanes, Virus Evolution, 7, veab038, (2021).

  Presenters

  • Michael Wilkinson

    Chan-Zuckerberg Biohub

  Authors

  • Michael Wilkinson

    Chan-Zuckerberg Biohub

  View abstract →

• Impact of the localization of the RNA binding domain of protein shells on the stability of virus particles

  ORAL

  March 16, 2022, 1:42 PM – March 16, 2022, 1:54 PM

  Presenters

  • Mohammadamin Safdari

    University of California, Riverside

  Authors

  • Mohammadamin Safdari

    University of California, Riverside

  • Yinan Dong

    University of California, Riverside

  • Paul Van der Schoot

    Eindhoven University of Technology

  • Roya Zandi

    University of California, Riverside

  View abstract →

• Ionic propulsion in a non-motile dinoflagellate.

  ORAL

  March 16, 2022, 1:54 PM – March 16, 2022, 2:06 PM

  Presenters

  • Adam G Larson

    Stanford University

  Authors

  • Adam G Larson

    Stanford University

  View abstract →

• Quantitative in vivo measurement of fork velocity by deep sequencing

  ORAL

  March 16, 2022, 2:06 PM – March 16, 2022, 2:18 PM

  Publication: Planned: Quantitative in vivo measurement of fork velocity by deep sequencing.

  Presenters

  • Dean Huang

    University of Washington

  Authors

  • Dean Huang

    University of Washington

  • Paul Wiggins

    University of Washington

  View abstract →

• Accessibility Patterns and Folding Frustration in Long Telomeric Overhangs

  ORAL

  March 16, 2022, 2:18 PM – March 16, 2022, 2:30 PM

  Presenters

  • Hamza Balci

    Kent State University

  Authors

  • Hamza Balci

    Kent State University

  • sajad shiekh

    Kent State University

  • Golam Mustafa

    Kent State University

  • Eric Yokie

    Kent State University

  • Mohammed E Hoque

    Kent State University

  • John J Portman

    Kent State University

  View abstract →

• Insertions and deletions affect RNA-protein interactions through RNA secondary structure

  ORAL

  March 16, 2022, 2:30 PM – March 16, 2022, 2:42 PM

  Presenters

  • Ralf Bundschuh

    Ohio State University, Ohio State Univ - Columbus

  Authors

  • Ralf Bundschuh

    Ohio State University, Ohio State Univ - Columbus

  • Carlos Owusu Ansah

    Ohio State University

  View abstract →

• Conformational dynamics of the Grp94 molecular chaperone in protein remodeling

  ORAL

  March 16, 2022, 2:42 PM – March 16, 2022, 2:54 PM

  Presenters

  • ANDREA N KRAVATS

    Miami University

  Authors

  • John Paul Alao

    Miami University

  • Molly Wynveen

    Miami University

  • IK Obaseki

    Miami University

  • Katherine Connors

    Miami University

  • Quynh Nguyen

    Miami University

  • Alex Tam

    Miami University

  • ANDREA N KRAVATS

    Miami University

  View abstract →

• New paradigms for bacteria sensing the world: molecular mechanisms of mechanosensation

  ORAL

  March 16, 2022, 2:54 PM – March 16, 2022, 3:06 PM

  Presenters

  • David Gomez

    New York University (NYU)

  Authors

  • David Gomez

    New York University (NYU)

  View abstract →

• Investigating structural stability of transmembrane Ligand-Appended Pillar[n]ene (LAP)

  ORAL

  March 16, 2022, 3:06 PM – March 16, 2022, 3:18 PM

  Presenters

  • Tyler J Duncan

    University of Texas at Austin

  Authors

  • Tyler J Duncan

    University of Texas at Austin

  • Harekrushna Behera

    University of Texas at Austin

  • Manish Kumar

    University of Texas at Austin

  • Venkatraghavan Ganesan

    University of Texas at Austin

  View abstract →

• Building an artificial neuron with simple hydrophobic nanopores: a one component memristor

  ORAL

  March 16, 2022, 3:18 PM – March 16, 2022, 3:30 PM

  Presenters

  • Goncalo S Paulo

    DIMA - Sapienza University of Rome

  Authors

  • Goncalo S Paulo

    DIMA - Sapienza University of Rome

  • Alberto Gubbiotti

    Univ of Rome La Sapienza

  • Alberto Giacomello

    Univ of Rome La Sapienza

  View abstract →