Physics of Proteins I: Structure & Dynamics II

Presentations

• Using core packing to assess the quality of NMR structures

  ORAL

  March 16, 2022, 9:00 AM – March 16, 2022, 9:12 AM

  Presenters

  • Alex T Grigas

    Yale University

  Authors

  • Alex T Grigas

    Yale University

  • Lynne Regan

    University of Edinburgh

  • Corey S O'Hern

    Yale University

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• Proteins – a celebration of consilience

  ORAL

  March 16, 2022, 9:12 AM – March 16, 2022, 9:24 AM

  Publication: [1] T. Škrbić, T. X. Hoang, A. Maritan, A. Giacometti, G. D. Rose and J. R. Banavar, "Building blocks of protein structures: Physics meets biology", Phys. Rev. E 104, 014402 (2021).<br>[2] T. Škrbić, T. X. Hoang, A. Giacometti, A. Maritan and J. R. Banavar, "Proteins – a celebration of consilience", Intl. J. Mod. Phys. B (2021), accepted for publication

  Presenters

  • Tatjana Skrbic

    Department of Physics and Institute for Fundamental Science, University of Oregon, Eugene, OR 97403, USA, University of Oregon

  Authors

  • Tatjana Skrbic

    Department of Physics and Institute for Fundamental Science, University of Oregon, Eugene, OR 97403, USA, University of Oregon

  • Trinh X Hoang

    Institute of Physics, Vietnam Academy of Science and Technology, 10 Dao Tan, Ba Dinh Hanoi 11108, Vietnam

  • Achille Giacometti

    Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca' Foscari di Venezia, Campus Scientifico, Edificio Alfa, via Torino 155, 30170 Venezia Mestre, Italy

  • Amos Maritan

    Dipartimento di Fisica e Astronomia, Università di Padova and INFN, via Marzolo 8, 35131 Padova, Italy

  • Jayanth R Banavar

    Department of Physics and Institute for Fundamental Science, University of Oregon, Eugene, OR 97403, USA

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• Impact of Water-Protein Interactions on Protein Dynamics(Nguyen Q. Vinh, Department of Physics and Center for Soft Matter and Biological Physics, Virginia Tech, Blacksburg, VA 24061)

  ORAL · Invited

  March 16, 2022, 9:24 AM – March 16, 2022, 10:00 AM

  Publication: 1. Journal of Physical Chemistry B (2018), 122, 6341–6350; https://doi.org/10.1021/acs.jpcb.8b02872<br>2. Biophysical Journal (2021), 120; https://doi.org/10.1016/j.bpj.2021.10.016<br>3. Review of Scientific Instruments (2015) 86, 123105; https://doi.org/10.1063/1.4936986<br>4. Journal of the American Chemical Society (2011), 133, 8942–8947; https://doi.org/10.1021/ja200566u

  Presenters

  • Vinh Q Nguyen

    Department of Physics and Center for Soft Matter and Biological Physics, Virginia Tech, Blacksburg, Virginia 24061, United States, Virginia Tech

  Authors

  • Vinh Q Nguyen

    Department of Physics and Center for Soft Matter and Biological Physics, Virginia Tech, Blacksburg, Virginia 24061, United States, Virginia Tech

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• Atomistic and coarse-grained molecular dynamics study of peptide-lipid membrane dissociation

  ORAL

  March 16, 2022, 10:00 AM – March 16, 2022, 10:12 AM

  Presenters

  • Ryan Smith

    University of Missouri

  Authors

  • Ryan Smith

    University of Missouri

  • Ioan Kosztin

    University of Missouri

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• Photo-Switching in Crystalline OCP

  ORAL

  March 16, 2022, 10:12 AM – March 16, 2022, 10:24 AM

  Presenters

  • Robert R Thompson

    Markelz Lab, University at Buffalo, SUNY

  Authors

  • Robert R Thompson

    Markelz Lab, University at Buffalo, SUNY

  • Andrea G Markelz

    State Univ of NY - Buffalo

  • Timothy Lafave

    State Univ of NY - Buffalo

  • Deepu K George

    State Univ of NY - Buffalo

  • Jeffrey A Mckinney

    State Univ of NY - Buffalo, State Univ of NY, Research Foundation of SUNY

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• Structural Dynamics of Prefusion Spike Protein of SARS-CoV-2 and its Variants: Insights from Molecular Dynamics

  ORAL

  March 16, 2022, 10:24 AM – March 16, 2022, 10:36 AM

  Presenters

  • Mortaza Derakhshani Molayousefi

    University of Arkansas

  Authors

  • Mortaza Derakhshani Molayousefi

    University of Arkansas

  • Ugochi Isu

    University of Arkansas

  • Mahmoud Moradi

    University of Arkansas

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• Temperature Sensitive Contact Analysis Directs Hyperactive Enzyme Design.

  ORAL

  March 16, 2022, 10:36 AM – March 16, 2022, 10:48 AM

  Presenters

  • Dan Burns

    Iowa State University

  Authors

  • Dan Burns

    Iowa State University

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• Characterizing Hydration Dynamics and Collective motions of Hemoglobin in Aqueous Solutions using High Sensitivity Dielectric Spectroscopy

  ORAL

  March 16, 2022, 10:48 AM – March 16, 2022, 11:00 AM

  Presenters

  • Ngoc L.H. Hoang

    Department of Physics and Center for Soft Matter and Biological Physics, Virginia Tech, Blacksburg, Virginia 24061, United States, Virginia Tech

  Authors

  • Ngoc L.H. Hoang

    Department of Physics and Center for Soft Matter and Biological Physics, Virginia Tech, Blacksburg, Virginia 24061, United States, Virginia Tech

  • Vinh Q Nguyen

    Department of Physics and Center for Soft Matter and Biological Physics, Virginia Tech, Blacksburg, Virginia 24061, United States, Virginia Tech

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• Assignment of Protein Collective Structural Vibrations Steering Conformational Change

  ORAL

  March 16, 2022, 11:00 AM – March 16, 2022, 11:12 AM

  Presenters

  • Xing Liu

    State Univ of NY - Buffalo

  Authors

  • Xing Liu

    State Univ of NY - Buffalo

  • Andrea G Markelz

    State Univ of NY - Buffalo

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• Quality assessment of computational models of protein-protein interfaces

  ORAL

  March 16, 2022, 11:12 AM – March 16, 2022, 11:24 AM

  Presenters

  • Grace Meng

    Yale University

  Authors

  • Grace Meng

    Yale University

  • Alex T Grigas

    Yale University

  • Lynne Regan

    University of Edinburgh

  • Corey S O'Hern

    Yale University

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• Monte Carlo simulations reveal limitations of the single-reaction-coordinate picture

  ORAL

  March 16, 2022, 11:24 AM – March 16, 2022, 11:36 AM

  Presenters

  • Sudeep Adhikari

    University of Mississippi

  Authors

  • Sudeep Adhikari

    University of Mississippi

  • Kevin S Beach

    University of Mississippi

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• Non-ergodic internal dynamics of a globular protein observed over fourteen orders in time

  ORAL

  March 16, 2022, 11:36 AM – March 16, 2022, 11:48 AM

  Presenters

  • Liang Hong

    Shanghai Jiao Tong University, Shanghai Jiao Tong Univ

  Authors

  • Liang Hong

    Shanghai Jiao Tong University, Shanghai Jiao Tong Univ

  • Jun Li

    Shanghai Jiao Tong Univ

  View abstract →