Ecological and Evolutionary Dynamics I

Presentations

• Leveraging evolutionary trade-offs and phage selection pressure to alter bacterial infections

  ORAL · Invited

  March 14, 2022, 9:00 AM – March 14, 2022, 9:36 AM

  Presenters

  • Paul Turner

    Yale University

  Authors

  • Paul Turner

    Yale University

  View abstract →

• AI-driven predictions of binding trends of SARS-CoV-2 variants from atomistic simulations

  ORAL

  March 14, 2022, 9:36 AM – March 14, 2022, 9:48 AM

  Publication: https://doi.org/10.1140/epje/s10189-021-00119-5

  Presenters

  • Sara Capponi

    IBM, IBM Almaden Research Center

  Authors

  • Sara Capponi

    IBM, IBM Almaden Research Center

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• Evolutionary Tradeoff of Enterovirus A71 Thermostability and Cell Entry

  ORAL

  March 14, 2022, 9:48 AM – March 14, 2022, 10:00 AM

  Presenters

  • Benjamin A Catching

    University of California, San Francisco

  Authors

  • Benjamin A Catching

    University of California, San Francisco

  • Ming T Yeh

    UCSF

  • Sara Capponi

    IBM, IBM Almaden Research Center

  • Raul Andino

    UCSF

  • Simone Bianco

    IBM Research - Almaden

  View abstract →

• Inferring polygenic selection for HIV escape from T cell responses

  ORAL

  March 14, 2022, 10:00 AM – March 14, 2022, 10:12 AM

  Publication: [1] Allen, T. M. et al. "Selective escape from CD8+ T-cell responses represents a major driving force of human immunodeficiency virus type 1 (HIV-1) sequence diversity and reveals constraints on HIV-1 evolution. " J. Virol. 79 (2005): 13239–13249.<br>[2] Sohail, Muhammad Saqib, et al. "MPL resolves genetic linkage in fitness inference from complex evolutionary histories." Nature <br>Biotechnology 39.4 (2021): 472-479.

  Presenters

  • Yirui Gao

    univeristy of california, riverside

  Authors

  • Yirui Gao

    univeristy of california, riverside

  • John P Barton

    University of California, Riverside

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• Modeling time-series of noisy two-cycle ecological oscillators

  ORAL

  March 14, 2022, 10:12 AM – March 14, 2022, 10:24 AM

  Presenters

  • Vahini Reddy Nareddy

    University of Massachusetts Amherst

  Authors

  • Vahini Reddy Nareddy

    University of Massachusetts Amherst

  • Jonathan L Machta

    University of Massachusetts Amherst

  • Karen Abbott

    Case Western Reserve University

  • Shadi Esmaeili-Wellman

    University of California, Davis

  • Alan Hastings

    University of California Davis, University of California, Davis

  View abstract →

• Dynamics of viral mutation and evolution

  ORAL

  March 14, 2022, 10:24 AM – March 14, 2022, 10:36 AM

  Presenters

  • Greyson R Lewis

    University of California, San Francisco

  Authors

  • Greyson R Lewis

    University of California, San Francisco

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• Diversity-generating host-disease coevolution with adaptive immunity

  ORAL

  March 14, 2022, 10:36 AM – March 14, 2022, 10:48 AM

  Publication: Planned paper: "Diversity-generating host-disease coevolution with adaptive immunity"

  Presenters

  • Madeleine J Bonsma-Fisher

    Univ of Toronto

  Authors

  • Madeleine J Bonsma-Fisher

    Univ of Toronto

  • Sidhartha Goyal

    Univ of Toronto

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• The scales of viral-host co-evolution.

  ORAL

  March 14, 2022, 10:48 AM – March 14, 2022, 11:00 AM

  Presenters

  • Aleksandra M Walczak

    Ecole Normale Superieure, CNRS - Sorbonne University

  Authors

  • Aleksandra M Walczak

    Ecole Normale Superieure, CNRS - Sorbonne University

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• Predicted adaptation of microbial population growth deceleration in feast-and-famine environments

  ORAL

  March 14, 2022, 11:00 AM – March 14, 2022, 11:12 AM

  Presenters

  • Justus Fink

    ETH Zurich

  Authors

  • Justus Fink

    ETH Zurich

  • Michael Manhart

    ETH Zurich

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• Preventing co-infection: a viral strategy with short-term benefits and long-term drawbacks

  ORAL

  March 14, 2022, 11:12 AM – March 14, 2022, 11:24 AM

  Publication: M. Hunter and D. Fusco, Preventing coi-infection: a viral strategy with short-term benefits and long-term drawbacks, bioRxiv 2021.09.07.458886, (2021)

  Presenters

  • Michael Hunter

    Univ of Cambridge

  Authors

  • Michael Hunter

    Univ of Cambridge

  • Diana Fusco

    Univ of Cambridge

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• Enhanced Biodiversity in Time-dependent Environments

  ORAL

  March 14, 2022, 11:24 AM – March 14, 2022, 11:36 AM

  Publication: tba

  Presenters

  • Tom Burkart

    Ludwig-Maximilians-Universitaet (LMU-Mun

  Authors

  • Tom Burkart

    Ludwig-Maximilians-Universitaet (LMU-Mun

  • Erwin Frey

    Ludwig-Maximilians-Universitaet (LMU-Munich), Arnold Sommerfeld Center for Theoretical Physics and Center for NanoScience, Department of Physics, Ludwig-Maximilians-Universität München, Theresienstraße 37, D-80333 München

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• Time to fixation in changing environments

  ORAL

  March 14, 2022, 11:36 AM – March 14, 2022, 11:48 AM

  Publication: Kaushik, S. and K. Jain, 2021 Time to fixation in changing environments. Genetics, iyab148. (Accepted)

  Presenters

  • Sachin Kaushik

    JNCASR

  Authors

  • Sachin Kaushik

    JNCASR

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• Metabolic preferences of marine copiotrophs are explained by the structure of central metabolism

  ORAL

  March 14, 2022, 11:48 AM – March 14, 2022, 12:00 PM

  Presenters

  • Matti Gralka

    Massachusetts Institute of Technology MI

  Authors

  • Matti Gralka

    Massachusetts Institute of Technology MI

  • Otto X Cordero

    MIT

  View abstract →