Dynamics of Gene Regulation

Presentations

• Three Pillars to Stochastic Control: Autoregulation, Noise and Feeback

  ORAL

  March 19, 2021, 9:00 AM – March 19, 2021, 9:12 AM

  Presenters

  • Michael May

    Biomedical Engineering, Colorado State University

  Authors

  • Michael May

    Biomedical Engineering, Colorado State University

  • Brian Munsky

    Colorado State University, Biomedical Engineering, Colorado State University

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• A Generalized Langevin Approach to Modeling Protein Migration

  ORAL

  March 19, 2021, 9:12 AM – March 19, 2021, 9:24 AM

  Presenters

  • Alana Bailey

    San Jose State University

  Authors

  • Alana Bailey

    San Jose State University

  • Liam G. Stanton

    San Jose State University

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• Stochastic transcription-error correction by backtracking and repelling RNA polymerases

  ORAL

  March 19, 2021, 9:24 AM – March 19, 2021, 9:36 AM

  Presenters

  • Xinzhe Zuo

    Department of Mathematics, University of California, Los Angeles

  Authors

  • Xinzhe Zuo

    Department of Mathematics, University of California, Los Angeles

  • Tom Chou

    Department of Mathematics, University of California, Los Angeles, University of California, Los Angeles, Computational Medicine, UCLA

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• Restricted mobility and jamming of densely packed DNA exiting a viral capsid

  ORAL

  March 19, 2021, 9:36 AM – March 19, 2021, 9:48 AM

  Presenters

  • Mounir Fizari

    University of California, San Diego

  Authors

  • Mounir Fizari

    University of California, San Diego

  • Nicholas Keller

    University of California, San Diego

  • Douglas E Smith

    University of California, San Diego

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• Switch-like mRNA localization to mitochondria arises from nonequilibrium protein translation effects

  ORAL

  March 19, 2021, 9:48 AM – March 19, 2021, 10:00 AM

  Presenters

  • Aidan Brown

    Ryerson Univ, Ryerson University

  Authors

  • Aidan Brown

    Ryerson Univ, Ryerson University

  • Ximena Garcia-Arceo

    University of California, San Diego

  • Tatsuhisa Tsuboi

    University of California, San Diego

  • Brian Zid

    University of California, San Diego

  • Elena Koslover

    University of California, San Diego

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• Live measurements of transcriptional bursting and dynamic gene regulation in early fly embryos

  ORAL

  March 19, 2021, 10:00 AM – March 19, 2021, 10:12 AM

  Presenters

  • Po-Ta Chen

    Princeton University

  Authors

  • Po-Ta Chen

    Princeton University

  • Benjamin Zoller

    Princeton University

  • Michal Levo

    Princeton University

  • Thomas Gregor

    Princeton University, Physics, Genomics, and Stem Cell Biology, Princeton University and Institut Pasteur, Joseph Henry Laboratories of Physics and Lewis-Sigler Institute for Integrative Genomics, Princeton University

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• A computational framework to study single-molecule canonical and non-canonical translation dynamics.

  ORAL

  March 19, 2021, 10:12 AM – March 19, 2021, 10:24 AM

  Presenters

  • Luis Aguilera

    Colorado State University

  Authors

  • Luis Aguilera

    Colorado State University

  • William Raymond

    Colorado State University

  • Amanda Koch

    Colorado State University

  • Kenneth Lyon

    Colorado State University

  • Tatsuya Morisaki

    Colorado State University

  • Timothy J. Stasevich

    Colorado State University

  • Brian Munsky

    Colorado State University, Biomedical Engineering, Colorado State University

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• Rationalizing the abundance statistics of feed-forward loop motifs: an evolutionary strategy mediated by control on fluctuations

  ORAL

  March 19, 2021, 10:24 AM – March 19, 2021, 10:36 AM

  Presenters

  • Ayan Biswas

    Bose Institute

  Authors

  • Md Sorique Aziz Momin

    Bose Institute

  • Ayan Biswas

    Bose Institute

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• Diffusiophoresis of passive particles in the presence of protein patterns

  ORAL

  March 19, 2021, 10:36 AM – March 19, 2021, 10:48 AM

  Presenters

  • Andriy Goychuk

    Arnold-Sommerfeld-Center for Theoretical Physics and Center for NanoScience, Ludwig-Maximilians-University of Munich

  Authors

  • Andriy Goychuk

    Arnold-Sommerfeld-Center for Theoretical Physics and Center for NanoScience, Ludwig-Maximilians-University of Munich

  • Beatrice Ramm

    Center for the Physics of Biological Function, Princeton University

  • Alena Khmelinskaia

    Department of Biochemistry, University of Washington

  • Philipp Blumhardt

    Department of Cellular and Molecular Biophysics, Max Planck Institute of Biochemistry

  • Hiromune Eto

    Department of Cellular and Molecular Biophysics, Max Planck Institute of Biochemistry

  • Kristina A. Ganzinger

    Physics of Cellular Interactions Group, AMOLF

  • Petra Schwille

    Department of Cellular and Molecular Biophysics, Max Planck Institute of Biochemistry, Max-Planck-Institute of Biochemistry Martinsried

  • Erwin Frey

    Arnold-Sommerfeld-Center for Theoretical Physics and Center for NanoScience, Ludwig-Maximilians-University of Munich, Ludwig-Maximilians-Universitaet (LMU-Munich), Arnold Sommerfeld Center for Theoretical Physics, Ludwig Maximilian University of Munich, Ludwig Maximilian University of Munich

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• Jamming-free crowded transport through the nuclear pore complex

  ORAL

  March 19, 2021, 10:48 AM – March 19, 2021, 11:00 AM

  Presenters

  • Tiantian Zheng

    Univ of Toronto

  Authors

  • Tiantian Zheng

    Univ of Toronto

  • Chad Gu

    Univ of Toronto

  • Anton Zilman

    Univ of Toronto, Physics, University of Toronto

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• Using genetic data to predict clinical outcomes in emergent antibody therapies against HIV.

  ORAL

  March 19, 2021, 11:00 AM – March 19, 2021, 11:12 AM

  Presenters

  • Colin LaMont

    Max Planck Institute for Dynamics and Self-Organization

  Authors

  • Colin LaMont

    Max Planck Institute for Dynamics and Self-Organization

  • Jakub Otwinowski

    Max Planck Institute for Dynamics and Self-Organization

  • Armita Nourmohammad

    Max Planck Institute for Dynamics and Self-Organization, Physics Department, University of Washington, University of Washington

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• Estimating the Role of Active Matter and Population Genetic Dynamics in Enhancing Antibiotic Resistance in Expanding Bacterial Colonies via Lattice Simulations

  ORAL

  March 19, 2021, 11:12 AM – March 19, 2021, 11:24 AM

  Presenters

  • Jimmy Gonzalez

    University of California, Merced

  Authors

  • Jimmy Gonzalez

    University of California, Merced

  • Daniel A Beller

    University of California, Merced, University of California Merced, Department of Physics, University of California, Merced

  • Arvind Gopinath

    University of California, Merced, Bioengineering, University of California, Merced

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• Trading bits in the readout from a genetic network

  ORAL

  March 19, 2021, 11:24 AM – March 19, 2021, 11:36 AM

  Presenters

  • Marianne Bauer

    Princeton University

  Authors

  • Marianne Bauer

    Princeton University

  • William S Bialek

    Princeton University

  • Thomas Gregor

    Princeton University, Physics, Genomics, and Stem Cell Biology, Princeton University and Institut Pasteur, Joseph Henry Laboratories of Physics and Lewis-Sigler Institute for Integrative Genomics, Princeton University

  • Mariela D Petkova

    Harvard University

  • Eric F. Wieschaus

    Princeton University

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• Top-down analysis of gene-regulatory networks using global coordination method

  ORAL

  March 19, 2021, 11:36 AM – March 19, 2021, 11:48 AM

  Presenters

  • Eyal Atias

    Bar Ilan Univ

  Authors

  • Eyal Atias

    Bar Ilan Univ

  • Guy Amit

    Bar Ilan Univ, Physics, Bar-Ilan University, Physics department, Bar-Ilan University

  • Amir Bashan

    Bar Ilan Univ, Physics, Bar-Ilan University, Physics department, Bar-Ilan University

  View abstract →