Noise and Stochasticity in Biological Networks

Presentations

• Sensing and making sense of fluctuating cellular states

  ORAL

  March 17, 2021, 4:00 PM – March 17, 2021, 4:12 PM

  Presenters

  • Felix Meigel

    Max Planck Institute for Physics of Complex Systems

  Authors

  • Felix Meigel

    Max Planck Institute for Physics of Complex Systems

  • Lina Hellwig

    Neurology Department, Charité University Medicine Berlin

  • Jörg Contzen

    Neurology Department, Charité University Medicine Berlin

  • Philipp Mergenthaler

    Neurology Department, Charité University Medicine Berlin

  • Steffen Rulands

    Max Planck Institute for the Physics of Complex Systems, Max Planck Institute for Physics of Complex Systems

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• Maximizing Information from Noisy Measurements of Single-cell Gene Expression Distributions

  ORAL

  March 17, 2021, 4:12 PM – March 17, 2021, 4:24 PM

  Presenters

  • Huy Vo

    Colorado State University

  Authors

  • Huy Vo

    Colorado State University

  • Brian Munsky

    Colorado State University, Biomedical Engineering, Colorado State University

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• The Long and Short of Templated Copying

  ORAL

  March 17, 2021, 4:24 PM – March 17, 2021, 4:36 PM

  Presenters

  • Jenny Poulton

    Royal Holloway Univ of London

  Authors

  • Jenny Poulton

    Royal Holloway Univ of London

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• Apply granger causality test to determine connections within peridodics ATP stimulated KTaR-1 cell colony

  ORAL

  March 17, 2021, 4:36 PM – March 17, 2021, 4:48 PM

  Presenters

  • Guanyu Li

    Oregon State University

  Authors

  • Guanyu Li

    Oregon State University

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• Topology Control and Pruning in Intertwined Biological Flow Networks.

  ORAL

  March 17, 2021, 4:48 PM – March 17, 2021, 5:00 PM

  Presenters

  • Felix Kramer

    Max Planck Institute of Molecular Cell Biology and Genetics (MPI-CBG)

  Authors

  • Felix Kramer

    Max Planck Institute of Molecular Cell Biology and Genetics (MPI-CBG)

  • Carl D Modes

    Max Planck Institute of Molecular Cell Biology and Genetics (MPI-CBG), Center for Systems Biology Dresden, Max Planck Institute of Molecular Cell Biology and Genetics

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• Investigation of Allosteric Mechanism from an Evolutionary Perspective

  ORAL

  March 17, 2021, 5:00 PM – March 17, 2021, 5:12 PM

  Presenters

  • Riya Samanta

    Biophysics Program, University of Maryland, College Park

  Authors

  • Riya Samanta

    Biophysics Program, University of Maryland, College Park

  • Calvin Muth

    Dept of Chemistry and Biochemistry, University of Maryland, College Park

  • Neel Sanghvi

    Fischell Dept of Bioengineering, University of Maryland, College Park

  • Dorothy Beckett

    Dept of Chemistry and Biochemistry, University of Maryland, College Park

  • Silvina Matysiak

    Fischell Department of Bioengineering, University of Maryland, College Park, Fischell Dept of Bioengineering, University of Maryland, College Park

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• Can active hydrodynamic fluctuations affect barrier crossing during enzymatic catalysis?

  ORAL

  March 17, 2021, 5:12 PM – March 17, 2021, 5:24 PM

  Presenters

  • Ashwani Tripathi

    IBS Center for Soft and Living Matter, Ulsan Natl Inst of Sci & Tech

  Authors

  • Ashwani Tripathi

    IBS Center for Soft and Living Matter, Ulsan Natl Inst of Sci & Tech

  • Tamoghna Das

    IBS Center for Soft and Living Matter, Ulsan Natl Inst of Sci & Tech, Institute for Basic Science

  • Govind Paneru

    IBS Center for Soft and Living Matter, Ulsan Natl Inst of Sci & Tech, Center for Soft and Living Matter, Institute for Basic Science

  • Hyuk Kyu Pak

    IBS Center for Soft and Living Matter, Ulsan Natl Inst of Sci & Tech, Center for Soft and Living Matter, Institute for Basic Science

  • Tsvi Tlusty

    IBS Center for Soft and Living Matter, Ulsan Natl Inst of Sci & Tech, Institute for Basic Science, Center for Soft and Living Matter, IBS, Theory group, Institute for Basic Sscience - Center for Soft and Living Matter, Center for Soft and Living Matter, Institute for Basic Science

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• Non-genetic heterogeneity in prostate cancer through coupled dynamics of Androgen Receptor signalling, Epithelial-Mesenchymal Transition and Notch-Delta-Jagged signalling

  ORAL

  March 17, 2021, 5:24 PM – March 17, 2021, 5:36 PM

  Presenters

  • Divyoj Singh

    Department of Undergraduate Studies, Indian Institute of Science

  Authors

  • Divyoj Singh

    Department of Undergraduate Studies, Indian Institute of Science

  • Federico Bocci

    Department of Mathematics, University of California, Irvine

  • Prakash Kulkarni

    Department of Medical Oncology & Therapeutics Research, City of Hope National Medical Center

  • Mohit Kumar Jolly

    Centre for Biosystems Science and Engineering, Indian Institute of Science, Indian Institute of Science Bangalore

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• RNA splicing and the renormalization group: why simple models can effectively describe complex and noisy gene networks

  ORAL

  March 17, 2021, 5:36 PM – March 17, 2021, 5:48 PM

  Presenters

  • John Vastola

    Vanderbilt Univ

  Authors

  • John Vastola

    Vanderbilt Univ

  • William R. Holmes

    Vanderbilt Univ

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• Use deep learning to infer the probability distributions for stochastic processes

  ORAL

  March 17, 2021, 5:48 PM – March 17, 2021, 6:00 PM

  Presenters

  • Shangying Wang

    IBM Research - Almaden

  Authors

  • Shangying Wang

    IBM Research - Almaden

  • Simone Bianco

    Almaden Research Center, IBM Research, IBM Research - Almaden

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• Precision of Protein Thermometry

  ORAL

  March 17, 2021, 6:00 PM – March 17, 2021, 6:12 PM

  Presenters

  • Michael Vennettilli

    Department of Physics and Astronomy, University of Pittsburgh

  Authors

  • Michael Vennettilli

    Department of Physics and Astronomy, University of Pittsburgh

  • Soutick Saha

    Department of Physics and Astronomy, Purdue University

  • Ushasi Roy

    Department of Physics and Astronomy, Purdue University

  • Andrew Mugler

    Department of Physics and Astronomy, University of Pittsburgh

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• Collective gradient sensing with limited positional information

  ORAL

  March 17, 2021, 6:12 PM – March 17, 2021, 6:24 PM

  Presenters

  • Emiliano Perez Ipina

    Johns Hopkins University

  Authors

  • Emiliano Perez Ipina

    Johns Hopkins University

  • Brian Camley

    Johns Hopkins University, Physics and Astronomy, Johns Hopkins University

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• Kinetic theory for structured populations: application to stochastic sizer-timer models of cell proliferation

  ORAL

  March 17, 2021, 6:24 PM – March 17, 2021, 6:36 PM

  Presenters

  • Tom Chou

    Department of Mathematics, University of California, Los Angeles, University of California, Los Angeles, Computational Medicine, UCLA

  Authors

  • Tom Chou

    Department of Mathematics, University of California, Los Angeles, University of California, Los Angeles, Computational Medicine, UCLA

  • Mingtao Xia

    Mathematics, UCLA, University of California, Los Angeles

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• Disentangling intrinsic and extrinsic gene expression noise in growing cells

  ORAL

  March 17, 2021, 6:36 PM – March 17, 2021, 6:48 PM

  Presenters

  • Jie Lin

    Harvard University

  Authors

  • Jie Lin

    Harvard University

  • Ariel Amir

    Harvard University, School of Engineering and Applied Science, Harvard University

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