Physics of Genome Organization: From DNA to Chromatin: II

Presentations

• On the Border of Order: Chromosomal Organization in Space and Time

  Invited

  March 5, 2020, 1:15 PM – March 5, 2020, 1:51 PM

  Presenters

  • Olga Dudko

    Physics, University of California, San Diego

  Authors

  • Yaojun Zhang

    Princeton University

  • Nimish Khanna

    Molecular Biology, University of California, San Diego

  • Joseph Lucas

    Physics, University of California, San Diego

  • Cornelis Murre

    Molecular Biology, University of California, San Diego

  • Olga Dudko

    Physics, University of California, San Diego

  View abstract →

• A “Tug-of-War” in a three dimensional Double-Nanopore system

  ORAL

  March 5, 2020, 1:51 PM – March 5, 2020, 2:03 PM

  Presenters

  • Swarnadeep Seth

    Univ of Central Florida

  Authors

  • Swarnadeep Seth

    Univ of Central Florida

  • Aniket Bhattacharya

    Univ of Central Florida

  View abstract →

• Studies of nucleosome-decorated DNA structures and deformations using a new analytical model

  ORAL

  March 5, 2020, 2:03 PM – March 5, 2020, 2:15 PM

  Presenters

  • Seyed Ahmad Sabok-Sayr

    Rutgers University, New Brunswick

  Authors

  • Seyed Ahmad Sabok-Sayr

    Rutgers University, New Brunswick

  • Wilma K Olson

    Rutgers University, New Brunswick

  View abstract →

• Long-lived memory and dynamics of liquefied chromatin

  ORAL

  March 5, 2020, 2:15 PM – March 5, 2020, 2:27 PM

  Presenters

  • Edward Banigan

    MIT, Massachusetts Institute of Technology MIT

  Authors

  • Edward Banigan

    MIT, Massachusetts Institute of Technology MIT

  • Houda Belaghzal

    University of Massachusetts Medical School

  • Tyler Borrman

    University of Massachusetts Medical School

  • Job Dekker

    University of Massachusetts Medical School

  • Leonid Mirny

    Massachusetts Institute of Technology MIT

  View abstract →

• The Dynamic Archaeal Chromatin “Slinky”

  Invited

  March 5, 2020, 2:27 PM – March 5, 2020, 3:03 PM

  Presenters

  • Samuel Bowerman

    University of Colorado Boulder

  Authors

  • Samuel Bowerman

    University of Colorado Boulder

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• 5-methyl-cytosine binding proteins loop DNA under nanoconfinement

  ORAL

  March 5, 2020, 3:03 PM – March 5, 2020, 3:15 PM

  Presenters

  • Ming Liu

    North Carolina State University

  Authors

  • Ming Liu

    North Carolina State University

  • David C. Williams

    Department of Pathology and Laboratory Medicine, University of North Carolina at Chapel Hill

  • Hong Wang

    North Carolina State University

  • Robert Riehn

    North Carolina State University

  View abstract →

• Nuclear chromatin patterns: modeling dynamics of intra-chromatin interactions and its impact on structure organization

  ORAL

  March 5, 2020, 3:15 PM – March 5, 2020, 3:27 PM

  Presenters

  • Rabia Laghmach

    Iowa State University

  Authors

  • Rabia Laghmach

    Iowa State University

  • Michele Di Pierro

    Rice Univ, Center for Theoretical Biological Physics, Rice University

  • Davit Potoyan

    Iowa State University

  View abstract →

• Long-distance group dynamics of RNA polymerases via DNA supercoiling

  ORAL

  March 5, 2020, 3:27 PM – March 5, 2020, 3:39 PM

  Presenters

  • Sangjin Kim

    University of Illinois at Urbana-Champaign

  Authors

  • Sangjin Kim

    University of Illinois at Urbana-Champaign

  View abstract →

• Interplay of chromatin self-adhesion and lengthwise compaction on interchromosomal organization

  ORAL

  March 5, 2020, 3:39 PM – March 5, 2020, 3:51 PM

  Presenters

  • Sumitabha Brahmachari

    Rice Univ

  Authors

  • Sumitabha Brahmachari

    Rice Univ

  • Vinicius Contessoto

    Rice Univ

  • Michele Di Pierro

    Rice Univ, Center for Theoretical Biological Physics, Rice University

  • Jose N Onuchic

    Rice Univ, Center for Theoretical Biological Physics, Rice University

  View abstract →

• A minimal model for correlated chromatin dynamics

  ORAL

  March 5, 2020, 3:51 PM – March 5, 2020, 4:03 PM

  Presenters

  • Kuang Liu

    Syracuse University

  Authors

  • Kuang Liu

    Syracuse University

  • Alison Patteson

    Syracuse University, Physics, Syracuse University, Department of Physics, Syracuse University

  • Edward Banigan

    MIT, Massachusetts Institute of Technology MIT

  • Jennifer Schwarz

    Syracuse University, Physics, Syracuse University

  View abstract →

• Synergistic Coordination of Chromatin Torsional Mechanics and Topoisomerase Activity

  ORAL

  March 5, 2020, 4:03 PM – March 5, 2020, 4:15 PM

  Presenters

  • Jaeyoon Lee

    Physics, Cornell University

  Authors

  • Tung T Le

    Physics, Cornell University / HHMI

  • Xiang Gao

    Physics, Cornell University / HHMI

  • Seong ha Park

    Biophysics, Cornell University

  • Jaeyoon Lee

    Physics, Cornell University

  • James T. Inman

    Physics, Cornell University / HHMI

  • Joyce H Lee

    Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine

  • Jessica L Killian

    Physics, Cornell University / HHMI

  • Ryan P Badman

    Physics, Cornell University

  • James M Berger

    Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine

  • Michelle D. Wang

    Physics, Cornell University / HHMI

  View abstract →