Physics of Microbiomes and Bacterial Communities

Presentations

• A statistical-mechanics approach to microbiome data analysis

  ORAL

  March 3, 2020, 10:00 AM – March 3, 2020, 10:12 AM

  Presenters

  • Robert Marsland

    Boston Univ

  Authors

  • Robert Marsland

    Boston Univ

  • Pankaj Mehta

    Boston Univ, Physics, Boston Univ, Boston University

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• Quantifying multi-species bacterial interactions in larval zebrafish

  ORAL

  March 3, 2020, 10:12 AM – March 3, 2020, 10:24 AM

  Presenters

  • Deepika Sundarraman

    Univ of Oregon

  Authors

  • Deepika Sundarraman

    Univ of Oregon

  • Edouard Hay

    Univ of Oregon

  • Dylan Martins

    Univ of Oregon

  • Drew Shields

    Univ of Oregon

  • Noah Pettinari

    Univ of Oregon

  • Karen Guillemin

    Univ of Oregon

  • Raghuveer Parthasarathy

    Univ of Oregon

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• Species covariance in <i>C.</i> e<i>legans </i>microbiome demonstrates existence of bacteria-bacteria and host-bacteria interactions

  ORAL

  March 3, 2020, 10:24 AM – March 3, 2020, 10:36 AM

  Presenters

  • K. Michael Martini

    Emory University, Emory College

  Authors

  • K. Michael Martini

    Emory University, Emory College

  • Megan Taylor

    Emory University

  • Ilya M Nemenman

    Emory University, Physics, Emory, Physics, Emory University

  • Nicole Marie Vega

    Emory University

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• Evidence for a multi-level trophic organization of the human gut microbiome

  ORAL

  March 3, 2020, 10:36 AM – March 3, 2020, 10:48 AM

  Presenters

  • Tong Wang

    University of Illinois at Urbana-Champaign

  Authors

  • Tong Wang

    University of Illinois at Urbana-Champaign

  • Akshit Goyal

    Massachusetts Institute of Technology MIT, The Simons Centre for the Study of Living Machines, NCBS, Physics of Living Systems, Massachusetts Institute of Technology

  • Veronika Dubinkina

    University of Illinois at Urbana-Champaign

  • Sergei Maslov

    University of Illinois at Urbana-Champaign

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• Regime shifts in a phage-bacterial ecosystem and strategies for its control

  ORAL

  March 3, 2020, 10:48 AM – March 3, 2020, 11:00 AM

  Presenters

  • Sergei Maslov

    University of Illinois at Urbana-Champaign

  Authors

  • Sergei Maslov

    University of Illinois at Urbana-Champaign

  • Kim Sneppen

    Niels Bohr Institute, Niels Bohr Institute, University of Copenhagen

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• Biophysical consequences of sublethal antibiotics on gut bacterial persistence and transmission

  ORAL

  March 3, 2020, 11:00 AM – March 3, 2020, 11:12 AM

  Presenters

  • Raghuveer Parthasarathy

    Univ of Oregon

  Authors

  • Brandon Schlomann

    Univ of Oregon

  • Travis J Wiles

    Univ of Oregon

  • Elena S Wall

    Univ of Oregon

  • Karen Guillemin

    Univ of Oregon

  • Raghuveer Parthasarathy

    Univ of Oregon

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• Delayed antibiotic exposure induces population collapse in enterococcal communities with drug-resistant subpopulations

  ORAL

  March 3, 2020, 11:12 AM – March 3, 2020, 11:24 AM

  Presenters

  • Kelsey Hallinen

    Biophysics, University of Michigan

  Authors

  • Kelsey Hallinen

    Biophysics, University of Michigan

  • Jason Karslake

    Biophysics, University of Michigan

  • Kevin Wood

    Univ of Michigan - Ann Arbor, Biophysics, University of Michigan

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• Predicting microbial community metabolic function from genomic structure

  ORAL

  March 3, 2020, 11:24 AM – March 3, 2020, 11:36 AM

  Presenters

  • Karna Gowda

    Physics, University of Illinois at Urbana-Champaign

  Authors

  • Karna Gowda

    Physics, University of Illinois at Urbana-Champaign

  • Derek J Ping

    Physics, University of Illinois at Urbana-Champaign

  • Laura B Troyer

    Physics, University of Illinois at Urbana-Champaign

  • Madhav Mani

    Northwestern University, Engineering Sciences and Applied Mathematics, Northwestern University

  • Seppe Kuehn

    Physics, University of Illinois at Urbana-Champaign

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• Cross-feeding is not necessarily evolutionarily stable

  ORAL

  March 3, 2020, 11:36 AM – March 3, 2020, 11:48 AM

  Presenters

  • Bo Liu

    Harvard University

  Authors

  • Bo Liu

    Harvard University

  • Zhiyuan Li

    Peking University

  • Ned Wingreen

    Princeton University, Department of Molecular Biology; Lewis-Sigler Institute for Integrative Genomics, Princeton University

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• Percolation transition of pusher-type microswimmers

  ORAL

  March 3, 2020, 11:48 AM – March 3, 2020, 12:00 PM

  Presenters

  • Fabian Jan Schwarzendahl

    School of Natural Sciences, University of California, Merced

  Authors

  • Fabian Jan Schwarzendahl

    School of Natural Sciences, University of California, Merced

  • Marco G. Mazza

    Department of Mathematical Sciences, Loughborough University, Leicestershire LE11 3TU, United Kingdom, Interdisciplinary Centre for Mathematical Modelling, Loughborough University

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• Biphasic Chemotaxis of <i>E. coli</i> to the Microbiota Metabolite Indole

  ORAL

  March 3, 2020, 12:00 PM – March 3, 2020, 12:12 PM

  Presenters

  • Pushkar Lele

    Texas A&M Univ

  Authors

  • Jingyun Yang

    Texas A&M Univ

  • Ravi Chawla

    Texas A&M Univ

  • Kathy Rhee

    Texas A&M Univ

  • Rachit Gupta

    Texas A&M Univ

  • Michael Manson

    Texas A&M Univ

  • Arul Jayaraman

    Texas A&M Univ

  • Pushkar Lele

    Texas A&M Univ

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• Dynamic motility selection drives population segregation in a bacterial swarm

  ORAL

  March 3, 2020, 12:12 PM – March 3, 2020, 12:24 PM

  Presenters

  • Yilin Wu

    Chinese Univ of Hong Kong

  Authors

  • Yilin Wu

    Chinese Univ of Hong Kong

  • Wenlong Zuo

    Chinese Univ of Hong Kong

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• Continuum modeling of bacterial biofilm development

  ORAL

  March 3, 2020, 12:24 PM – March 3, 2020, 12:36 PM

  Presenters

  • Chenyi Fei

    Princeton University

  Authors

  • Chenyi Fei

    Princeton University

  • Ricard Alert

    Princeton University

  • Boyang Qin

    Princeton University

  • Andrew Bridges

    Princeton University

  • Bonnie Bassler

    Princeton University

  • Ned Wingreen

    Princeton University, Department of Molecular Biology; Lewis-Sigler Institute for Integrative Genomics, Princeton University

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• E. coli Bacteria near "Black Hole"

  ORAL

  March 3, 2020, 12:36 PM – March 3, 2020, 12:48 PM

  Presenters

  • Trung Phan

    Princeton University

  Authors

  • Trung Phan

    Princeton University

  • Ryan Morris

    University of Edinburgh

  • Matthew Black

    Princeton University

  • Ke-Chih Lin

    Princeton University

  • Julia Bos

    Pasteur Institute

  • Robert Austin

    Princeton University

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• Microbial communities governed by interplay of bacterial interaction and biofilm mechanics

  ORAL

  March 3, 2020, 12:48 PM – March 3, 2020, 1:00 PM

  Presenters

  • Gabi Steinbach

    Georgia Inst of Tech

  Authors

  • Gabi Steinbach

    Georgia Inst of Tech

  • Michael Ng Siulung

    Georgia Inst of Tech

  • Cristian Crisan

    Georgia Inst of Tech

  • Brian K. Hammer

    Georgia Inst of Tech

  • Peter Yunker

    Georgia Institute of Technology, Physics, GEORGIA TECH, Georgia Inst of Tech

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