Can low energy electrons lead to strand breaks in DNA under realistic conditions?

ORAL

Abstract

It is widely accepted that low energy electrons produced by ionizing radiation play an important role in causing DNA damage [B. Bouda\"iffa et al., Science {\bf 287}, 1658 (2000)]. Understanding the behaviour of DNA components in the condensed phase due to such electrons is a fundamental step towards modelling this damage within a realistic environment. Here we present a computational study of the effect of low energy electrons in condensed phase models of solvated DNA fragments. First we show that excess electrons, which are initially found delocalized, quickly localize around the nucleobases within a 15 fs time scale. Energies and time scales are comparable for each of the bases [M. Smyth and J. Kohanoff, Phys. Rev. Lett. {\bf 106}, 238108 (2011)]. The phosphodiester bond C$_{3'}$-O$_{3'}$, which under normal conditions is very stable, weakens significantly upon electron attachment both, in the gas and in the condensed phase. Computation of free energy profiles show that barriers for bond cleavage are in the region of 5-8 kcal/mol for all the solvated nucleotides, thus suggesting that this kind of event is quite likely at ambient temperature. This supports the notion that ionizing radiation can actually lead to DNA strand breaks in the physiological environment.

Authors

  • Jorge Kohanoff

    Physics, Queens U, Belfast, UK, Queen's University, Belfast, Atomistic Simulation Centre, Queens University Belfast, Belfast BT7 1NN, Northern Ireland, United Kingdom, Queens University Belfast

  • Maeve Smyth

    Queens University Belfast