GPU-based scale-resolving simulations of the chaotic cardiovascular flows

ORAL

Abstract

Blood flow in the heart and large vessels presents a complex vortical character which involves a rich cascade of spatial and temporal scales. For instance, ejection of oxygenated blood out of the left ventricle results in a relatively high Reynolds number flow (Re=5000-10000) which is prone to a turbulence signature through interaction with the complex aortic geometry. Besides vessel curvature and subtle surface features, turbulence in the aorta may further be enhanced by a disease scenario e.g. atherosclerosis, and/or a present medical device. Scale-resolving computational fluid dynamics (CFD) simulations can be used to provide a detailed view of this turbulent flow. We present a GPU-based incompressible Navier-Stokes solver for scale-resolving simulations of blood flow in patient-specific aortic geometries. The flow solver leverages an optimised MPI-CUDA implementation and dedicated numerics, to coup with grid sizes beyond one billion. The geometric features are extracted from computed tomography (CT) angiograms and are integrated into the solver using a sharp-interface immersed boundary method. Using the present GPU-based solver, we show that intensive simulations matching O(100M) voxels which often require O(10K) CPU cores can now be performed with only O(10) P100 GPUs.

Publication: Planned: GPU-based scale-resolving simulations of the chaotic cardiovascular flows, to be submitted, 2021.

Numerical Methodology (published):
1. A high-throughput hybrid task and data parallel Poisson solver for large-scale simulations of incompressible turbulent flows on distributed GPUs, Journal of Computational Physics, 437, 110329, 2021.

2. High-order accurate simulation of incompressible turbulent flows on many parallel GPUs of a hybrid-node supercomputer, Computer Physics Communications, 244, 132-142, 2019.

Presenters

  • Hadi Zolfaghari

    Univ of Cambridge

Authors

  • Hadi Zolfaghari

    Univ of Cambridge

  • Mervyn Andiapen

    Barts Heart Centre, Barts Health NHS Trust, London, United Kingdom

  • Andreas Baumbach

    Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, London, UK

  • Anthony Mathur

    Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, London, UK

  • Rich R Kerswell

    Univ of Cambridge