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3D Dynamic Simulations of Sea Fan Structures

POSTER

Abstract

Sea fans are a variety of corals structured in a flat fanlike pattern of numerous cylindrical polyps. Their morphology has been previously studied through 2D images and digitized data points depicting the structures have been obtained. The project employs polymer physics and molecular simulations to study samples of tree-like and network structures and analyze differences in their dynamics. The sea fans’ motion was initially simulated with the Large-scale Atomic/Molecular Massively Parallel Simulator Molecular Dynamics software by connecting the data points through harmonic bonds and modulating the flexibility/bending stiffness through an angle potential between three particles. Next, hydrodynamics was integrated using Smooth Particle Hydrodynamics and the Constant Energy Dissipative Particle Dynamics. Preliminary analysis of the output through particle displacements computations suggests that tree structures tend to be more dynamic than networks and that the greatest displacements correspond to outer particles, a result consistent with experimental findings. Further analysis of all available structures is necessary to conclusively find the correlation between the morphology of sea fans and their environment.

Authors

  • Ariana Vlad

    Harvard University

  • Kristin Rabosky

    Middle Tennessee State University, University of Alabama Tuscaloosa, Swarthmore College, CT Clinical Innovation Center, Department of Radiology, Mayo Clinic, Rochester, MN, Bard College, Wright State University, University of Michigan, University of Hawai'i-Manoa, Rice University, University of Alaska Fairbanks, University of Utah, South Dakota School of Mines and Technology, Furman University, University of Notre Dame, Theoretical Physics Division, Institute of High Energy Physics, the Chinese Academy of Sciences, Peng Huanwu Center for Fundamental Theory, University of Science and Technology China, University of Cambridge, University of Kansas, SLAC National Accelerator Laboratory, Planetary Science Institute, Iowa State University, College of Idaho, University of Washington, Bothell, Ottawa Hills High School, Case Western Reserve University, Yale University and Strasbourg Astronomical Observatory, Yale University, Korea Astronomy and Space Science Institute, NOIRLab, Purdue University, Korea Instotute for Advanced Study, Perimeter Institute, Rutgers University, University of Maryland, Juniata College, Columbia University, City University of New York / American Museum of Natural History, Columbia University / American Museum of Natural History, Morehead State University, Hofstra University, Occidental College, Georgia Institute of Technology, School of Physics and Astronomy, University of Minnesota, The Oskar Klein Centre, Department of Astronomy, University of Mississippi, Stanford/KIPAC/SLAC, University of Connecticut, Kansas State University, Vassar College, Penn State, Department of Chemistry and Biochemistry, Worcester Polytechnic Institute, Department of Physics, Worcester Polytechnic Institute, Clark University, University of Illinois at Urbana-Champaign, Rhodes College, Rensselaer Polytechnic Institute, Harvard University, Cornell University, Air Force Research Lab, Wright-Patterson AFB, Ohio 45433, Air Force Research Lab, Wright-Patterson AFB, Ohio 45433 & UES, Inc., 4401 Dayton-Xenia Rd, Dayton, OH 45432, Department of Physics, University of Dayton, Dayton Ohio & Air Force Research Lab, Wright-Patterson AFB, Ohio 45433, Los Alamos National Laboratory, Utah State University, Ramapo College of NJ, Brookhaven National Laboratory, Research Center of Topological Functional Materials and Henan Key Laboratory of Photovoltaic Materials, Henan Univers., Brookhaven National Laboratory, Montclair State University, Weber State University

  • Kristin Rabosky

    Middle Tennessee State University, University of Alabama Tuscaloosa, Swarthmore College, CT Clinical Innovation Center, Department of Radiology, Mayo Clinic, Rochester, MN, Bard College, Wright State University, University of Michigan, University of Hawai'i-Manoa, Rice University, University of Alaska Fairbanks, University of Utah, South Dakota School of Mines and Technology, Furman University, University of Notre Dame, Theoretical Physics Division, Institute of High Energy Physics, the Chinese Academy of Sciences, Peng Huanwu Center for Fundamental Theory, University of Science and Technology China, University of Cambridge, University of Kansas, SLAC National Accelerator Laboratory, Planetary Science Institute, Iowa State University, College of Idaho, University of Washington, Bothell, Ottawa Hills High School, Case Western Reserve University, Yale University and Strasbourg Astronomical Observatory, Yale University, Korea Astronomy and Space Science Institute, NOIRLab, Purdue University, Korea Instotute for Advanced Study, Perimeter Institute, Rutgers University, University of Maryland, Juniata College, Columbia University, City University of New York / American Museum of Natural History, Columbia University / American Museum of Natural History, Morehead State University, Hofstra University, Occidental College, Georgia Institute of Technology, School of Physics and Astronomy, University of Minnesota, The Oskar Klein Centre, Department of Astronomy, University of Mississippi, Stanford/KIPAC/SLAC, University of Connecticut, Kansas State University, Vassar College, Penn State, Department of Chemistry and Biochemistry, Worcester Polytechnic Institute, Department of Physics, Worcester Polytechnic Institute, Clark University, University of Illinois at Urbana-Champaign, Rhodes College, Rensselaer Polytechnic Institute, Harvard University, Cornell University, Air Force Research Lab, Wright-Patterson AFB, Ohio 45433, Air Force Research Lab, Wright-Patterson AFB, Ohio 45433 & UES, Inc., 4401 Dayton-Xenia Rd, Dayton, OH 45432, Department of Physics, University of Dayton, Dayton Ohio & Air Force Research Lab, Wright-Patterson AFB, Ohio 45433, Los Alamos National Laboratory, Utah State University, Ramapo College of NJ, Brookhaven National Laboratory, Research Center of Topological Functional Materials and Henan Key Laboratory of Photovoltaic Materials, Henan Univers., Brookhaven National Laboratory, Montclair State University, Weber State University